1. promptClass generated a file that included \section{Methods}{ No methods defined with class "mspathDistributedCalculator" in the signature. } Yet there are such methods. Is this a not-working yet feature, or is something funny going on (maybe I have definitions in the library and in the global workspace...)? 2. Is the \code{\link{myS4class-class}} the proper way to cross-reference a class? \code{\link{myS4method-method}} the right way to refer to a method? I looked for something like \class or \method to correspond to \code, but didn't see anything. 3. This question goes beyond documentation. I have been approaching things like this: setClass("A", ....) foo <- function(a) .... setClass("B", ...) setMethod("foo", "B", ....) so the first foo turns into the default function for the generic. This was primarily motivated by discovering that setMethod("foo", "A") where I have the first function definition produced an error. Is this a reasonable way to proceed? Then do I document the generic with standard function documentation for foo? Are there some examples I could look at? When I want to refer to the function generically, how do I do that? I'm using R 2.2.1, and I've found the documentation on documenting S4 a bit too brief (even after looking at the recommended links, which in some cases don't have much on documentation). Since the docs say it's a work in progress, I'm hoping to get the latest word here. Thanks. -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062