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Hi Tena, I recommend rapache for building websites with R. See http://biostat.mc.vanderbilt.edu/rapache/ -Ista > ---------- Forwarded message ---------- > From: "Tena Sakai" <tsakai at gallo.ucsf.edu> > To: <ted.harding at manchester.ac.uk>, <r-help at r-project.org> > Date: Tue, 28 Apr 2009 15:04:53 -0700 > Subject: Re: [R] Newbie R question PART2 > Hi, > > Many thanks to Wacek Kusnierczyk and Ted Harding. > > I learned 3 new tricks. (Not bad for a n...

...edhawkShared-server: destroyed connection of mualhpcp01.hpc.muohio.edu-17684-2012/12/13-17:25:16:994209-RedhawkShared-client-0-0 [2012-12-15 00:53:24.743459] I [server-helpers.c:474:do_fd_cleanup] 0-RedhawkShared-server: fd cleanup on /mkennedy/tramelot_nwfs/rpr3/rpr3/rpr3_sparky/matrix/.4d_ccnoesy.ucsf.QTQswL [2012-12-15 00:53:24.743430] I [server-helpers.c:330:do_lock_table_cleanup] 0-RedhawkShared-server: finodelk released on /mkennedy/tramelot_nwfs/rpr3/rpr3/rpr3_sparky/matrix/.4d_ccnoesy.ucsf.QTQswL [2012-12-15 00:53:24.743400] I [server-helpers.c:741:server_connection_put] 0-RedhawkShared-se...

...on this device: reported only once per page The entire record of installing ggplot2 package, ending up with the line above is in the attached file. I would think this should be reproducible with anybody else. If you have any other suggestion, I am all ears. Regards, Tena Sakai tsakai at gallo.ucsf.edu -----Original Message----- From: Ian Fellows [mailto:ifellows at gmail.com] Sent: Tue 5/5/2009 11:43 PM To: Tena Sakai Subject: Re: I updated/reinstalled ggplot2 and the trouble started... Tena, May I suggest that you do a full clean install of R 2.9.0, then install ggplot2 from cran. See...

...Too many (1614) weights > dim(targets) [1] 146 2 > dim(data) ## Note I'm using the transpose as input [1] 400 146 --- Is there a way around this? Pointers to relevant docs/code or the source of the problem would be greatly appreciated. Thanks, _Taku --- Taku A. Tokuyasu, PhD UCSF Cancer Center, Box 0128 San Francisco, CA 94143-0128 Tel: (415) 514-1530 Fax: (415) 502-3179 Email: tokuyasu@cc.ucsf.edu [[alternative HTML version deleted]]

On Sat, May 9, 2015 at 12:55 AM, peter dalgaard <pdalgd at gmail.com> wrote: > >> On 09 May 2015, at 02:53 , Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: >> >> Hi, >> >> I spotted what looks like another(*) mistake in 'R Language >> Definition' on how subsetting should work. In Section 'Indexing >> matrices and arrays' >> [http://cran.r-project.org/doc/manuals/r-release/R-lang...

Greetings, I am running R v 1.6.1 on a linux operating system with 2GB physical memory and dual processors. When using BATCH to run a simulation with a super large dataset I can only get through 1 1/2 repetitions before R uses all the memory and the simulation crashes. It starts with 10% of the memory - up to 50% by the end of the first repetition and then starts the second with approx 65% of the

Hi, I calculated a few correlation coefficients. Now I want to know whether they are different from each other. Is there an R package that can do such a comparison? Thanks for any suggestion. Best, Donglei Hu Department of Medicine UCSF [[alternative HTML version deleted]]

...ke that? I could find no reference to it in the language manual. What I'm wondering is whether there are desirable ways to express recursion in R. Thanks. -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062

Hello, I am trying to run R on my Mac (OS10.5.6) and am having trouble installing and running packages (genefilter in particular in Bioconductor) I've tried re-installing R and it hasn't solved the issue. Thanks, ~Nicole Slusher

...hared object; recompile with -fPIC CConverters.o: could not read symbols: Bad value collect2: ld returned 1 exit status It saysm "recompile with -fPIC" But I am already doing so, am I not? What am I doing wrong here? Any help would be appreciated. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...n a log10 scale. The y axis would be the study sites. >From what I can figure out, it looks like the plotCI function will do everything except give me an x-axis that is on a log10 scale and I can't get the logaxis function in the log10 package to work. Study or ll ul order UCSF 0.7 0.55 0.89 1 MDA 0.76 0.71 0.93 2 UK 0.68 0.51 0.89 3 Mayo 0.5 0.28 0.87 4 Thanks for any suggestions! Terri [[alternative HTML version deleted]]

...irectory.) and bingo! Yeeehaa! My page suddenly looks so much nicer! So, here's today's newbie quesion: How can I get R to insert such line into the head section of html file being generated under hwriter? I would appreciate your guidance. Thank you. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

Hi, I have come to my wits end again (lately, it's a very short trip). I have been trying to connect to Samba 3.0.21b but Windows keeps throwing up the logon dialog. I'm using "Map network drive" to try to mount this share. It seems the problem is only on the Windows side since I have tested the connection through the Unix account. Both user id and password work fine.

...i'' ) Error in library("Rmpi") : there is no package called ''Rmpi'' > I think it is upset because the file mpi.h is missing. Am I right? If so, How would I cure this problem? And if not, what must I do? Please help. Thank you. Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...Is it time to try ggplot2? I found I could get results very quickly with ggplot, but am not sure how much control it gives me over the finer details. Thanks. -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062

...the link is no longer good (after putting it all on one line). "Writing R Extensions" (2.3.0 version) makes no reference to this topic that I can see. -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062

...l, though it's even uglier: > a <- eval(substitute(function(z) { z; function() z+x}, list(x=k))) > a1 <- a(k1) > k1 <- 5 > a1() [1] 120 -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062

...e. (by the way, I was able to use R INSTALL rmutil if I unpacked rmutil using 'cat rmutil.tgz | tar xvz' and then ran 'R INSTALL rmutil'.) Keep up the Excellent Work, RPO p.s. Thanks for a wonderful piece of software. R is a real boon to my research. ------ Robert Otillar | UCSF Graduate Group in Biophysics ------ ------ 833 Ashbury #2 | mailto:BobbyO@itsa.ucsf.edu ------ ------ San Francisco, CA 94117 | http://bioinformatics.ucsf.edu/bobbyo ------ ------ Tel. <send email> | Fax (415)759-6579 ------ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...e installation material stated to look for libR.so, and I want to make sure that the one I installed (2.9.0) is used by little r. Would someone please clue me in? Why don't I have libR.so and yet when I execute ./bin/R it says: R version 2.9.0 (2009-04-17) Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...otentially, I could make the script itself act differently on the head node (the only one I want to debug right now), including changing the redirection there. -- Ross Boylan wk: (415) 514-8146 185 Berry St #5700 ross at biostat.ucsf.edu Dept of Epidemiology and Biostatistics fax: (415) 514-8150 University of California, San Francisco San Francisco, CA 94107-1739 hm: (415) 550-1062