R devel - Mar 2004 - Re: make.search.html() without write permission in R.home() (PR#6663)

Brian Yandell <byandell@wisc.edu> writes:
> Folks,
> I am working on a Windows system which is part of the UW-Madison
> statistics LAN. R is maintained on a file system to which I cannot write.
> I tried installing a package and got the following interplay:
Set the lib argument to install.packages to a directory in which you
do have write permissions.  From ?install.packages
...
     install.packages(pkgs, lib, CRAN = getOption("CRAN"),
                      contriburl = contrib.url(CRAN),
                      method, available = NULL, destdir = NULL,
                      installWithVers = FALSE)
...

lib,instlib: character string giving the library directory where to
          install the packages.
> 
> >
install.packages(choose.files('',filters=Filters[c('zip','All'),]),
> .libPaths()[1], CRAN = NULL)
> updating HTML package descriptions
> Error in file(f.tg, open = "w") : unable to open connection
> In addition: Warning messages:
> 1: cannot update HTML package index in: make.packages.html(lib.loc)
> 2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> > link.html.help()
> Error in file(f.tg, open = "w") : unable to open connection
> In addition: Warning messages:
> 1: cannot update HTML package index in: make.packages.html(lib.loc)
> 2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> > .libPaths()
> [1] "P:/stat/yandell/public/statgen/R"
"W:/unsup/R/i386_win2k/library"
> > Sys.getenv("R_LIBS")
>                                  R_LIBS
> "P:\\stat\\yandell\\public\\statgen\\R"
> 
> This broke in make.search.html(), where it tried to overwrite the search
> file
> 	W:\unsup\R\i386_win2k/doc/html/search/index.txt
> which was generated from
> 	file.path(R.home(), "doc/html/search/index.txt")
> 
> My library loaded fine, and the flat file help works fine, but there are
> no HTML info on my local libraryies in the R_LIBS area. I have no idea how
> hardwired .../search/index.txt is into various R routines.
> 
> Thanks,
> Brian
-- 
Douglas Bates                            bates@stat.wisc.edu
Statistics Department                    608/262-2598
University of Wisconsin - Madison        http://www.stat.wisc.edu/~bates/

We'll fix the error message (it has been fixed once before, but it must
have got broken in another fix), but see the rw-FAQ.  Your private library
area will not show up in the HTML search index even if you had write 
permission: that index is only for the main library (used in the correct 
sense).

We need better information to be able to understand (let alone fix) the 
final part.

On Thu, 11 Mar 2004 bates@stat.wisc.edu wrote:
> Brian Yandell <byandell@wisc.edu> writes:
> 
> > Folks,
> > I am working on a Windows system which is part of the UW-Madison
> > statistics LAN. R is maintained on a file system to which I cannot
write.
> > I tried installing a package and got the following interplay:
> 
> Set the lib argument to install.packages to a directory in which you
> do have write permissions.  From ?install.packages
> ...
>      install.packages(pkgs, lib, CRAN = getOption("CRAN"),
>                       contriburl = contrib.url(CRAN),
>                       method, available = NULL, destdir = NULL,
>                       installWithVers = FALSE)
> ...
> 
> lib,instlib: character string giving the library directory where to
>           install the packages.
> 
> > 
> > >
install.packages(choose.files('',filters=Filters[c('zip','All'),]),
> > .libPaths()[1], CRAN = NULL)
> > updating HTML package descriptions
> > Error in file(f.tg, open = "w") : unable to open connection
> > In addition: Warning messages:
> > 1: cannot update HTML package index in: make.packages.html(lib.loc)
> > 2: cannot open file
`W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> > > link.html.help()
> > Error in file(f.tg, open = "w") : unable to open connection
> > In addition: Warning messages:
> > 1: cannot update HTML package index in: make.packages.html(lib.loc)
> > 2: cannot open file
`W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> > > .libPaths()
> > [1] "P:/stat/yandell/public/statgen/R"
"W:/unsup/R/i386_win2k/library"
> > > Sys.getenv("R_LIBS")
> >                                  R_LIBS
> > "P:\\stat\\yandell\\public\\statgen\\R"
> > 
> > This broke in make.search.html(), where it tried to overwrite the
search
> > file
> > 	W:\unsup\R\i386_win2k/doc/html/search/index.txt
> > which was generated from
> > 	file.path(R.home(), "doc/html/search/index.txt")
> > 
> > My library loaded fine, and the flat file help works fine, but there
are
> > no HTML info on my local libraryies in the R_LIBS area. 
There should be, if you mean *packages*.  What exactly does not work?
> I have no idea how
> > hardwired .../search/index.txt is into various R routines.
> > 
> > Thanks,
> > Brian
> 
> 
-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595