search for: statgen

..., open = "w") : unable to open connection > In addition: Warning messages: > 1: cannot update HTML package index in: make.packages.html(lib.loc) > 2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt' > > .libPaths() > [1] "P:/stat/yandell/public/statgen/R" "W:/unsup/R/i386_win2k/library" > > Sys.getenv("R_LIBS") > R_LIBS > "P:\\stat\\yandell\\public\\statgen\\R" > > This broke in make.search.html(), where it tried to overwrite the search > file > W:\unsup...

I did that. In fact the default uses .libPaths()[1], which I have set to "P:/stat/yandell/public/statgen/R" The package installs fine. However, the HTML search is not done properly. Again, the break occurred after installation of the package, when make.search.html() was invoked. Brian On Thu, 11 Mar 2004, Douglas Bates wrote: > Brian Yandell <byandell@wisc.edu> writes: > > >...

...ot located under $R_HOME/library, then the html help will not be able to find it. Don't think there's a known work-around. Cheers, Andy > From: byandell@wisc.edu > > I did that. In fact the default uses .libPaths()[1], which I > have set to > "P:/stat/yandell/public/statgen/R" > The package installs fine. However, the HTML search is not > done properly. > Again, the break occurred after installation of the package, when > make.search.html() was invoked. > Brian > > > On Thu, 11 Mar 2004, Douglas Bates wrote: > > > Brian Yandel...

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich Institute of Medical Biometry and Statistics Medical University of Luebeck Ratzeburger Allee 160, House 4 23538 Lue...

...help() Error in file(f.tg, open = "w") : unable to open connection In addition: Warning messages: 1: cannot update HTML package index in: make.packages.html(lib.loc) 2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt' > .libPaths() [1] "P:/stat/yandell/public/statgen/R" "W:/unsup/R/i386_win2k/library" > Sys.getenv("R_LIBS") R_LIBS "P:\\stat\\yandell\\public\\statgen\\R" This broke in make.search.html(), where it tried to overwrite the search file W:\unsup\R\i386_win2k/doc/html/search/index...

I've just uploaded an R version of Daniel Schaid's 'haplo.score' library (from http://www.mayo.edu/statgen/) to CRAN. >From the DESCRIPTION file: [haplo.score is a] suite of routines that can be used to compute score statistics to test associations between haplotypes and a wide variety of traits, including binary, ordinal, quantitative, and Poisson. These methods assume that all subjects are unr...

Hi folks: Does anyone know of a way to do (linear) hypothesis tests of parameters after fitting a maximum-likelihood model w/ optim? I can't seem to find anything like a Wald test whose documentation says it applies to optim output. Also, thanks again to everyone who gave me feedback on the robustness of ML estimation in R! Peter ********************************

....660579603192917090365313727164e-86858901" > > already gives a rarely seen small p value. I gather I also need a multiple precision exp() and their sum since exp(z^2/2) is also a Bayes Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am obliged to clarify, see https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf. > > I agree many feel geneticists go to far with small p values which I would have difficulty to argue againston the other hand it is also expected to see these in a non-genetic context. For instance the Framingham study was es...

Dear everybody! I m seeking the package named hdarray for the analysis of microarrays data. It must not included in the base packages. Thanks in advance. Aboubakar Maitournam. -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

...major is genetic epidemiology. I am learning the FAM-MDR algorithm, which is used to detect the gene-gene and gene-environment interactions in the data of pedigree. The codes were written by Tom Cattaert of the University of Liege. The algorithms and the sample datasets are available at http://www.statgen.ulg.ac.be/index.php?option=com_content&view=article&id=90&Itemid=85. The R I used is R-2.15.1 in the Windows XP system. The command lines I have run are as follows: # data files pedfile="pedigree1.ped" phenofil="pheno1.dat" mapfile="simulation.map" # s...

You may want to look into using the log option to qnorm e.g., in round figures: > log(1e-300) [1] -690.7755 > qnorm(-691, log=TRUE) [1] -37.05315 > exp(37^2/2) [1] 1.881797e+297 > exp(-37^2/2) [1] 5.314068e-298 Notice that floating point representation cuts out at 1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm()

...1] "1.660579603192917090365313727164e-86858901" already gives a rarely seen small p value. I gather I also need a multiple precision exp() and their sum since exp(z^2/2) is also a Bayes Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am obliged to clarify, see https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf. I agree many feel geneticists go to far with small p values which I would have difficulty to argue againston the other hand it is also expected to see these in a non-genetic context. For instance the Framingham study was established...

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and

...64e-86858901" > > > > already gives a rarely seen small p value. I gather I also need a > multiple precision exp() and their sum since exp(z^2/2) is also a Bayes > Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am > obliged to clarify, see > https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf > . > > > > I agree many feel geneticists go to far with small p values which I > would have difficulty to argue againston the other hand it is also expected > to see these in a non-genetic context. For instance th...

...; > already gives a rarely seen small p value. I gather I also need a >> multiple precision exp() and their sum since exp(z^2/2) is also a Bayes >> Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am >> obliged to clarify, see >> https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf >> . >> > >> > I agree many feel geneticists go to far with small p values which I >> would have difficulty to argue againston the other hand it is also expected >> to see these i...

...; > already gives a rarely seen small p value. I gather I also need a >> multiple precision exp() and their sum since exp(z^2/2) is also a Bayes >> Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am >> obliged to clarify, see >> https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf >> . >> > >> > I agree many feel geneticists go to far with small p values which I >> would have difficulty to argue againston the other hand it is also expected >> to see these i...