Displaying 17 results from an estimated 17 matches for "statgen".
2004 Mar 11
1
Re: make.search.html() without write permission in R.home() (PR#6663)
..., open = "w") : unable to open connection
> In addition: Warning messages:
> 1: cannot update HTML package index in: make.packages.html(lib.loc)
> 2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> > .libPaths()
> [1] "P:/stat/yandell/public/statgen/R" "W:/unsup/R/i386_win2k/library"
> > Sys.getenv("R_LIBS")
> R_LIBS
> "P:\\stat\\yandell\\public\\statgen\\R"
>
> This broke in make.search.html(), where it tried to overwrite the search
> file
> W:\unsup...
2004 Mar 11
0
Re: make.search.html() without write permission in R.home() (PR#6664)
I did that. In fact the default uses .libPaths()[1], which I have set to
"P:/stat/yandell/public/statgen/R"
The package installs fine. However, the HTML search is not done properly.
Again, the break occurred after installation of the package, when
make.search.html() was invoked.
Brian
On Thu, 11 Mar 2004, Douglas Bates wrote:
> Brian Yandell <byandell@wisc.edu> writes:
>
> >...
2004 Mar 11
0
Re: make.search.html() without write permission in R.hom e( ) (PR#6664)
...ot located under $R_HOME/library, then the html help will
not be able to find it. Don't think there's a known work-around.
Cheers,
Andy
> From: byandell@wisc.edu
>
> I did that. In fact the default uses .libPaths()[1], which I
> have set to
> "P:/stat/yandell/public/statgen/R"
> The package installs fine. However, the HTML search is not
> done properly.
> Again, the break occurred after installation of the package, when
> make.search.html() was invoked.
> Brian
>
>
> On Thu, 11 Mar 2004, Douglas Bates wrote:
>
> > Brian Yandel...
2002 Aug 08
2
Splus-funktion "haplo.score"
Sehr geehrte Damen und Herren,
hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus
geschriebene "haplo.score"- Funktion auch unter R verwendet werden
kann.
siehe
http://www.mayo.edu/statgen/software/
Wenn ja, wie sind die Aufrufe
Splus CHAPTER -m und
Splus make
in R zu realisieren?
Herzlichen Dank f?r Ihre M?he
mit freundlichen Gr??en
--
Dr. rer. nat. Andreas Fr?hlich
Institute of Medical Biometry and Statistics
Medical University of Luebeck
Ratzeburger Allee 160, House 4
23538 Lue...
2004 Mar 11
0
make.search.html() without write permission in R.home() (PR#6662)
...help()
Error in file(f.tg, open = "w") : unable to open connection
In addition: Warning messages:
1: cannot update HTML package index in: make.packages.html(lib.loc)
2: cannot open file `W:\unsup\R\i386_win2k/doc/html/search/index.txt'
> .libPaths()
[1] "P:/stat/yandell/public/statgen/R" "W:/unsup/R/i386_win2k/library"
> Sys.getenv("R_LIBS")
R_LIBS
"P:\\stat\\yandell\\public\\statgen\\R"
This broke in make.search.html(), where it tried to overwrite the search
file
W:\unsup\R\i386_win2k/doc/html/search/index...
2002 Sep 14
0
R-version of haplo.score uploaded to CRAN
I've just uploaded an R version of Daniel Schaid's 'haplo.score' library
(from http://www.mayo.edu/statgen/) to CRAN.
>From the DESCRIPTION file:
[haplo.score is a] suite of routines that can be used to compute score
statistics to test associations between haplotypes and a wide variety of
traits, including binary, ordinal, quantitative, and Poisson. These methods
assume that all subjects are unr...
2003 Jul 14
2
Hypothesis testing after optim
Hi folks: Does anyone know of a way to do (linear) hypothesis tests of
parameters after fitting a maximum-likelihood model w/ optim? I can't seem
to find anything like a Wald test whose documentation says it applies to
optim output.
Also, thanks again to everyone who gave me feedback on the robustness of ML
estimation in R!
Peter
********************************
2019 Jun 23
2
Calculation of e^{z^2/2} for a normal deviate z
....660579603192917090365313727164e-86858901"
>
> already gives a rarely seen small p value. I gather I also need a multiple precision exp() and their sum since exp(z^2/2) is also a Bayes Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am obliged to clarify, see https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf.
>
> I agree many feel geneticists go to far with small p values which I would have difficulty to argue againston the other hand it is also expected to see these in a non-genetic context. For instance the Framingham study was es...
2001 Aug 08
2
Library hdarray
Dear everybody!
I m seeking the package named hdarray for the analysis of microarrays
data.
It must not included in the base packages.
Thanks in advance.
Aboubakar Maitournam.
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Send "info", "help", or
2012 Aug 24
0
A question about GRAMMAR calculations in the FAM_MDR algorithm
...major is genetic epidemiology. I am learning the FAM-MDR
algorithm, which is used to detect the gene-gene and gene-environment
interactions in the data of pedigree. The codes were written by Tom
Cattaert of the University of Liege. The algorithms and the sample datasets
are available at
http://www.statgen.ulg.ac.be/index.php?option=com_content&view=article&id=90&Itemid=85.
The R I used is R-2.15.1 in the Windows XP system.
The command lines I have run are as follows:
# data files
pedfile="pedigree1.ped"
phenofil="pheno1.dat"
mapfile="simulation.map"
# s...
2019 Jun 21
4
Calculation of e^{z^2/2} for a normal deviate z
You may want to look into using the log option to qnorm
e.g., in round figures:
> log(1e-300)
[1] -690.7755
> qnorm(-691, log=TRUE)
[1] -37.05315
> exp(37^2/2)
[1] 1.881797e+297
> exp(-37^2/2)
[1] 5.314068e-298
Notice that floating point representation cuts out at 1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm()
2019 Jun 21
0
Calculation of e^{z^2/2} for a normal deviate z
...1] "1.660579603192917090365313727164e-86858901"
already gives a rarely seen small p value. I gather I also need a multiple precision exp() and their sum since exp(z^2/2) is also a Bayes Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am obliged to clarify, see https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf.
I agree many feel geneticists go to far with small p values which I would have difficulty to argue againston the other hand it is also expected to see these in a non-genetic context. For instance the Framingham study was established...
2000 Mar 23
4
dna library
I have just placed version 0.2 alpha of my library, dna, on my web
page at
www.luc.ac.be/~jlindsey/rcode.html
The R functions in this library cover most of the basic methods of
dna and protein sequence analysis. The library includes ports of
CLUSTAL W for multiple sequence alignment and flip for finding open
reading frames in a dna sequence.
There are an enormous number of interesting and
2000 Mar 23
4
dna library
I have just placed version 0.2 alpha of my library, dna, on my web
page at
www.luc.ac.be/~jlindsey/rcode.html
The R functions in this library cover most of the basic methods of
dna and protein sequence analysis. The library includes ports of
CLUSTAL W for multiple sequence alignment and flip for finding open
reading frames in a dna sequence.
There are an enormous number of interesting and
2019 Jun 23
0
Calculation of e^{z^2/2} for a normal deviate z
...64e-86858901"
> >
> > already gives a rarely seen small p value. I gather I also need a
> multiple precision exp() and their sum since exp(z^2/2) is also a Bayes
> Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am
> obliged to clarify, see
> https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf
> .
> >
> > I agree many feel geneticists go to far with small p values which I
> would have difficulty to argue againston the other hand it is also expected
> to see these in a non-genetic context. For instance th...
2019 Jun 24
2
Calculation of e^{z^2/2} for a normal deviate z
...; > already gives a rarely seen small p value. I gather I also need a
>> multiple precision exp() and their sum since exp(z^2/2) is also a Bayes
>> Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am
>> obliged to clarify, see
>> https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf
>> .
>> >
>> > I agree many feel geneticists go to far with small p values which I
>> would have difficulty to argue againston the other hand it is also expected
>> to see these i...
2019 Jun 24
0
Calculation of e^{z^2/2} for a normal deviate z
...; > already gives a rarely seen small p value. I gather I also need a
>> multiple precision exp() and their sum since exp(z^2/2) is also a Bayes
>> Factor so I get log(x_i )/sum_i log(x_i) instead. To this point, I am
>> obliged to clarify, see
>> https://statgen.github.io/gwas-credible-sets/method/locuszoom-credible-sets.pdf
>> .
>> >
>> > I agree many feel geneticists go to far with small p values which I
>> would have difficulty to argue againston the other hand it is also expected
>> to see these i...