search for: installwithvers

R-devel, SVN revision 35729 (this morning, euro-time) So far, I'm having awful luck with the "installWithVers" flags. Recent example: I can install.packages("lattice", installWithVers=TRUE) successfully (no errors, at least it looks like a successful install), but can't load it: Error in library.dynam(pkg,pkg,lib) : shared library 'lattice_0.12-7' not found Error: .onLoad fail...

It might be my settings or improper use -- but if I use the "installWithVers=TRUE" flag for update.packages(), I don't seem to get updates; and if I use "install.packages(new.packages(),installWithVers=TRUE)", it seems to (re-)install identical versions of what I have. (this is with Rdevel from subversion from yesterday) best, -tony blindglobe at gmail...

...I have download the tar.gz packages from the CRAN archive, and created an folder holding all the files. install.packages("changepoint_0.3.tar.gz", lib="~/Rtools/dir/of/pkgs/", repos=NULL, dependencies=FALSE, contriburl="~/Rtools/dir/of/pkgs/changepoint_0.3.tar.gz", installWithVers= TRUE) I have received several different errors, depending on which version of R I am using Version 2.12: warning: unable to access index for repository 'lib = "~/Documents/Rtools/dir/of/pkgs/"' is not writable Thanks for any thought. Cheers -- View this message in context...

...MD5 sums checked Error: cannot remove prior installation of package 'Matrix' > traceback() 4: stop(sprintf(gettext("cannot remove prior installation of package '%s'"), curPkg), domain = NA, call. = FALSE) 3: unpackPkg(foundpkgs[okp, 2], foundpkgs[okp, 1], lib, installWithVers) 2: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies) 1: install.packages("Matrix") This is on a Windows XP machine for R 2.11 [...

...2005-05-03 17:13:36.000000000 +0300 +++ jarioksa.update.packages.R 2005-05-03 17:13:58.000000000 +0300 @@ -59,5 +59,5 @@ install.packages(update[, "Package"], instlib, contriburl = contriburl, method = method, available = available, destdir = destdir, - installWithVers = installWithVers, type) + installWithVers = installWithVers, type = type) } } For the second, problem, I don't know what to do. grepping R-patched_2005-05-03.tar.gz source found only one instance of .install.macbinary(): the failed call in R-patched/src/library/utils/R/packa...

...In addition: Warning message: cannot open compressed file 'hs95av2hs3ug6cdf_6.0.0.tar.gz/DESCRIPTION' >traceback() 5: gzfile(file, "r") 4: read.dcf(file.path(curPkg, "DESCRIPTION"), c("Package", "Version")) 3: unpackPkg(pkgs[i], pkgnames[i], lib, installWithVers) 2: .install.macbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies) 1: install.packages("hs95av2hs3ug6cdf_6.0.0.tar.gz", repos = NULL, method...

...es that are already installed on R. Problem 2: When I execute the following command: install.packages("ade4", repos="http://cran.r-project.org", contriburl = contrib.url( "http://streaming.stat.iastate.edu/CRAN/", type="MacBinary"), dependencies=TRUE, installWithVers=TRUE) I download the package, but it is for R version 2.6 rather than the current version 2.7.1. Is there anyway to either point R in the right direction for the packages or have R install the correct version of the packages. Much appreciated, Art

....update.packages.R 2005-05-03 17:13:58.000000000 +0300 > > @@ -59,5 +59,5 @@ > > install.packages(update[, "Package"], instlib, contriburl = > > contriburl, > > method = method, available = available, destdir = destdir, > > - installWithVers = installWithVers, type) > > + installWithVers = installWithVers, type = type) > > } > > } > > > > > > For the second, problem, I don't know what to do. grepping > > R-patched_2005-05-03.tar.gz source found only one instance of > &gt...

...39; Error in gzfile(file, "r") : unable to open connection > traceback() 6: gzfile(file, "r") 5: read.dcf(file.path(curPkg, "DESCRIPTION"), c("Package", "Version", "Type")) 4: unpackPkg(foundpkgs[okp, 2], foundpkgs[okp, 1], lib, installWithVers) 3: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies) 2: install.packages(NULL, .libPaths()[1], dependencies = NA, type = type) 1: utils:::men...

I am receiving the following errors when trying to install gcrma and a number of other Bioconductor packages when the installWithVers flag is set to be TRUE. >source("http://www.bioconductor.org/getBioC.R"); >getBioC("gcrma", installWithVers=T); Running biocinstall version 2.0.7 with R version 2.5.0 Your version of R requires version 2.0 of Bioconductor. Loading required package: affy Loading require...

...ory: > utils:::menuInstallPkgs() Error in .readRDS(pfile) : unknown input format > traceback() 5: .readRDS(pfile) 4: .packages(all.available = TRUE) 3: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies, ...) 2: install.packages(NULL, .libPaths()[1], dependencies = NA, type = type) 1: utils:::menuInstallPkgs() > sessionInfo() R version 2.8.1 Patched (2009-02-17 r47956) i386-pc-mingw32 locale: LC_COLLATE=French_France.1252;LC_CTYPE=French_Fr...

....update.packages.R 2005-05-03 17:13:58.000000000 +0300 > > @@ -59,5 +59,5 @@ > > install.packages(update[, "Package"], instlib, contriburl = > > contriburl, > > method = method, available = available, destdir = destdir, > > - installWithVers = installWithVers, type) > > + installWithVers = installWithVers, type = type) > > } > > } > > > > > > For the second, problem, I don't know what to do. grepping > > R-patched_2005-05-03.tar.gz source found only one instance of > &gt...

...es that are already installed on R. Problem 2: When I execute the following command: install.packages("ade4", repos="http://cran.r-project.org", contriburl = contrib.url( "http://streaming.stat.iastate.edu/CRAN/", type="MacBinary"), dependencies=TRUE, installWithVers=TRUE) I download the package, but it is for R version 2.6 rather than the current version 2.7.1. Is there anyway to either point R in the right direction for the packages or have R install the correct version of the packages. Much appreciated, Art University of Washington Department of Medic...

...cently I tried to install a package in R version 1.8.1 for Windows. First I un".tar.gz"ed it and ".zip"ed it back in to be able to use the option Install package(s) from local zip files... Unfortunately tis error message appeared: Error in unpackPkg(pkgs[i], pkgnames[i], lib, installWithVers) : Malformed bundle DESCRIPTION file, no Contains field It's correct that the DESCRIPTION file does not have a Contains field, but I can't figure out why it's mandatory and what values it may contain. The manual Writing R Extensions doesn't even mention this field in p...

...t=iso-8859-1' length 12560 bytes opened URL downloaded 12Kb trying URL `http://cran.r-project.org/bin/windows/contrib/1.7/rpart_3.1-12.zip' Content type `application/zip' length 231827 bytes opened URL downloaded 226Kb Error in unpackPkg(foundpkgs[okp, 2], pkgnames[okp], lib, installWithVers) : Can not remove prior installation of package ?????????????????????????????????????????????????????????????? Evidently I need to uninstall first, but I can?t figure out how. I?ve looked in the pdf manuals, in the R FAQ, and in the R for Windows FAQ, and don?t find instructions for doi...

...o download it by running the command install.packages("tree","C:\Program Files\R\rw1081\library","http://cran.r-project.org/src/contrib",destdir= "C:\Program <http://cran.r-project.org/src/contrib",destdir="C:/Program> Files\R\rw1081\library",installWithVers=TRUE) But it tries to connect to http://cran.r-project.org/src/contrib/bin/windows/contrib/1.8/PACKAGES <http://cran.r-project.org/src/contrib/bin/windows/contrib/1.8/PACKAGES> instead of the URL I enter above. 2) Also I tried to download it by copying the zip file first tree_1.0-18.tar.gz...

...ving error and I feel I am not using it correctly, could some one show me why. install.packages(fdim, "C:\Program Files\R\rw1081\library" , CRAN = "http://cran.r-project.org", "internal", available = NULL, destdir = "C:\Program Files\R\rw1081\library", installWithVers = FALSE) thanks

The system.file() and .path.package() functions appear to be unaware of package versions and can return incorrect information or fail if a package is installed using `installWithVers = TRUE' of install.packages(). For example, I can run > install.packages("session", "~/R-local/libs", installWithVers = TRUE) and > library(session, version = "1.0.1") without a problem. However, > system.file(package = "session") [1] &quo...

...: trying URL `http://cran.r-project.org/bin/windows/contrib/1.9/lattice_0.9-16.zip' Content type `application/zip' length 496618 bytes opened URL downloaded 484Kb package 'lattice' successfully unpacked and MD5 sums checked Error in unpackPkg(foundpkgs[okp, 2], pkgnames[okp], lib, installWithVers) : Can not remove prior installation of package

...; charset=iso-8859-1' length 17113 bytes opened URL downloaded 16Kb trying URL `http://cran.r-project.org/bin/windows/contrib/1.9/gregmisc_0.10.2.zip' Content type `application/zip' length 594089 bytes opened URL downloaded 580Kb Error in unpackPkg(foundpkgs[okp, 2], pkgnames[okp], lib, installWithVers) : Unable to create temp directory C:/PROGRA~1/R/rw1090/library\file2869 > Thanks in advance for any help. Minghua [[alternative HTML version deleted]]