Ape is an R package for "analyses of phylogenetics and evolution". The
first version (0.1) has been released on 27 August 2002 and is available on
CRAN.
>From the 'Description' file of version 0.1:
Ape provides functions for reading, and plotting
phylogenetic trees in parenthetic format (standard Newick
format), analyses of comparative data in a phylogenetic
framework, analyses of diversification and macroevolution,
computing distances from allelic and nucleotide data,
reading nucleotide sequences from GenBank via internet, and
several tools such as Mantel's test, computation of minimum
spanning tree, or the population parameter theta based on
various approaches.
Bug reports, comments and suggestions on Ape are welcome.
Emmanuel Paradis
Laboratoire de Pal?ontologie
Institut des Sciences de l'?volution
Universit? Montpellier II
F-34095 Montpellier c?dex 05
France
phone: +33 4 67 14 39 64
fax: +33 4 67 14 36 10
mailto:paradis at isem.univ-montp2.fr
http://www.isem.univ-montp2.fr/ISEMFre/Equipes/PPP/PPerso/Paradis.php
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