R announce - Jun 2002 - new package `multcomp'

New package `multcomp' for general multiple comparisons

	written by Frank Bretz, Torsten Hothorn and Peter Westfall

We've uploaded the package `multcomp' to CRAN.
The R package allows for multiple comparisons of
k groups in general linear models. We use the unifying
representations of multiple contrast tests, which include all
common multiple comparison procedures, such as the many-to-one
comparisons of Dunnett, the all-pairwise comparisons of Tukey and
many other procedures. We provide a list of 9
standard procedures (Dunnett, Tukey, Sequen, AVE, Changepoint,
Williams, Marcus, McDermott, Tetrade), where the user selects the 
comparisons of his interest. In addition, a free input interface 
for the contrast matrix allows for more special comparisons.

The comparisons itself are not restricted to balanced or simple
designs. Instead, the programs are designed to suit multiple
comparisons within the general linear model, thus allowing for
covariates, nested effects, correlated means and missing values.
The program is designed for the normal set-up with a common (possibly unknown)
variance and a known covariance matrix. But instead of using the
usual Bonferroni and Holm procedures, we take the exact
correlations between the test statistics into account by use of
the multivariate t-distribution. The resulting procedures are
therefore more powerful (the Bonferroni and Holm adjusted 
p-values are reported for reference). We also allow the user to perform an
asymptotic analysis based on the multivariate normal
distribution (as required e.g. in multiple comparisons based on
asymptotic rank transformations; assumed asymptotic normality
when comparing binomial parameters; etc.). Two functions will be
provided. The first one computes confidence intervals for the
common single step procedures (`simint'). This approach can be uniformly
improved by applying the closed testing principle, what is
implemented in the second function (`simtest'; but no confidence intervals
are available for the latter procedure). Use either `csimint' or
`csimtest' if you want to pass the estimates by hand. 

For testing and validation purposes we included some examples from Westfall
et al. (1999).
    
This is a first release and needs some improvement, therefore the user 
interfaces may change in forthcoming versions. Suggestions for 
improvements are very welcome!
>From the DESCRIPTION file:
Package: multcomp
Title: Multiple Tests and Simultaneous Confidence Intervals 
Version: 0.2-6
Date: $Date: 2002/06/19 07:24:40 $
Author: Frank Bretz <bretz at ifgb.uni-hannover.de>,
 Torsten Hothorn <Torsten.Hothorn at rzmail.uni-erlangen.de> and 
 Peter Westfall <WESTFALL at ba.ttu.edu>
Description: Multiple comparison procedures for the one-way layout.
Maintainer: Torsten Hothorn <Torsten.Hothorn at rzmail.uni-erlangen.de>
Depends: R (>= 1.4.0), mvtnorm (>=0.5-4)
License: GPL

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On Thu, 20-Jun-2002 at 05:47PM +0200, Torsten Hothorn wrote:

|> 
|> 
|> New package `multcomp' for general multiple comparisons
|> 
|> 	written by Frank Bretz, Torsten Hothorn and Peter Westfall
|> 
|> We've uploaded the package `multcomp' to CRAN.

Where?  I don't see it.  Did you use a mirror site?

best 

-- 
Patrick Connolly
HortResearch
Mt Albert
Auckland
New Zealand 
Ph: +64-9 815 4200 x 7188
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