Puppet users - May 2013 - puppet does not see changes in /etc/puppet/puppet.conf

I did a fresh install on Ubuntu 12.04 with apt packages from puppet labs. I 
have agents talking to my puppetmaster.

Puppetmaster is running apache/passenger connected to puppetdb and 
puppet-dashboard is setup to use puppetdb but it is not able to see any 
reports submitted to puppetdb.

When an agent connects to master I see :
Info: ''replace facts'' command for hostname submitted to
PuppetDB with UUID
x-x-x-x
Info: ''store report'' command for hostname submitted to
PuppetDB with UUID
x-x-x-x

so that looks correct but using my dashboard I see only stuff from before I 
changed to puppetdb.

I think my problem is this:

puppet config print | grep store still shows the old ''default''
value and
not the values that I have entered in /etc/puppet/puppet.conf


[main]
  server=puppet

  logdir=/var/log/puppet
  vardir=/var/lib/puppet
  ssldir=/var/lib/puppet/ssl
  rundir=/var/run/puppet
  factpath=$vardir/lib/facter
  templatedir=$confdir/templates
  prerun_command=/etc/puppet/etckeeper-commit-pre
  postrun_command=/etc/puppet/etckeeper-commit-post

[master]
  ssl_client_header = SSL_CLIENT_S_DN
  ssl_client_verify_header = SSL_CLIENT_VERIFY

  storeconfigs = true
  storeconfigs_backend = puppetdb
  reports = store,puppetdb
  reporturl = http://dashboard/reports/upload

  node_terminus = exec
  external_nodes = /usr/bin/env PUPPET_DASHBOARD_URL=http://dashboard 
/usr/share/puppet-dashboard/bin/external_node


I have restarted/rebooted/reinstalled but still hit the same issue for 
puppet-dashboard.

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If I move:

  storeconfigs = true
  storeconfigs_backend = puppetdb
  reports = store,puppetdb
  reporturl = http://dashboard/reports/upload

under [main] I can now "see" these changes using puppet config print
BUT
dashboard still does not pull any inventory information or reports from 
puppetdb

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