Martin Rother
2001-Dec-21 23:57 UTC
[R] {R} 1.4.0 compiling failed on sun sparc solaris 2.6
Hi!
I tried to configure and compile R 1.4.0 on a
sun sparc solaris 2.6 box using the sun compiler (workshop 6?);
but:
-------------------------------------------------------------------------------------------------
(mt100): ./configure --x-includes=/usr/openwin/include
--x-libraries=/usr/openwin/lib --with-f77
[...]
R is now configured for sparc-sun-solaris2.6
Source directory: .
Installation directory: /usr/local
C compiler: cc -g
C++ compiler: CC -g
FORTRAN compiler: f77 -g
X11 support: yes
Gnome support: no
Tcl/Tk support: yes
R profiling support: yes
R as a shared library: no
(mt100): gmake
[...]
gmake[4]: Leaving directory
`/home/mt/rother/info/ftp/R/R-1.4.0/src/library/methods/src'
gmake[4]: Entering directory
`/home/mt/rother/info/ftp/R/R-1.4.0/src/library/methods'
dumping R code in package `methods'
initializing class and method definitions now
Bus Error
gmake[4]: *** [../../../library/methods/R/all.rda] Error 138
gmake[4]: Leaving directory
`/home/mt/rother/info/ftp/R/R-1.4.0/src/library/methods'
gmake[3]: *** [all] Error 2
gmake[3]: Leaving directory
`/home/mt/rother/info/ftp/R/R-1.4.0/src/library/methods'
gmake[2]: *** [R] Error 1
gmake[2]: Leaving directory `/home/mt/rother/info/ftp/R/R-1.4.0/src/library'
gmake[1]: *** [R] Error 1
gmake[1]: Leaving directory `/home/mt/rother/info/ftp/R/R-1.4.0/src'
gmake: *** [R] Error 1
-------------------------------------------------------------------------------------------------
explicit call in subdirectory:
-------------------------------------------------------------------------------------------------
(mt100): cd src/library/methods
/home/mt/rother/info/ftp/R/R-1.4.0/src/library/methods
(mt100): limit coredumpsize unlimited
(mt100): ../../../bin/R --vanilla --slave < all.R
initializing class and method definitions now
Bus Error (core dumped)
(mt100): dbx ../../../bin/R.bin core
Reading R.bin
[...]
program terminated by signal BUS (invalid address alignment)
Current function is gzfile_open
750 fp = gzopen(R_ExpandFileName(con->description), con->mode);
(dbx) where
[1] deflateEnd(0xaf0e18, 0xef429758, 0x115f188, 0x11700e0, 0xef423138,
0xef3c5b3c), at 0xef6b4be0
[2] destroy(0xaf0e18, 0x6, 0x8, 0xfffffff1, 0x8, 0x0), at 0xef6b2e48
[3] gz_open(0xaf0e18, 0x1122734, 0xffffffff, 0x0, 0x0, 0x0), at 0xef6b25a8
[4] gzopen(0xaf8138, 0x1122730, 0x6, 0x77, 0x81010100, 0x1122730), at
0xef6b3ba0
=>[5] gzfile_open(con = 0x1122728), line 750 in "connections.c"
[6] do_gzfile(call = 0x46eb54, op = 0x329d1c, args = 0xb3d650, env =
0xb3d554), line 886 in "connections.c"
[7] do_internal(call = 0x46eac8, op = 0x31b07c, args = 0xb3d650, env =
0xb3d554), line 1011 in "names.c"
[8] Rf_eval(e = 0x46eac8, rho = 0xb3d554), line 400 in "eval.c"
[9] Rf_applyClosure(call = 0x777da4, op = 0x46e9e8, arglist = 0xb3ddd4, rho =
0xb47598, suppliedenv = 0x30a888), line 591 in "eval.c"
[10] Rf_eval(e = 0x777da4, rho = 0xb47598), line 435 in "eval.c"
[11] do_set(call = 0x777d50, op = 0x31b5d8, args = 0x777d6c, rho = 0xb47598),
line 1097 in "eval.c"
[12] Rf_eval(e = 0x777d50, rho = 0xb47598), line 400 in "eval.c"
[13] do_if(call = 0x777bac, op = 0x30a2d8, args = 0x777bc8, rho = 0xb47598),
line 690 in "eval.c"
[14] Rf_eval(e = 0x777bac, rho = 0xb47598), line 400 in "eval.c"
[15] do_begin(call = 0x777f80, op = 0x31b514, args = 0x777b90, rho =
0xb47598), line 887 in "eval.c"
[16] Rf_eval(e = 0x777f80, rho = 0xb47598), line 400 in "eval.c"
[17] do_if(call = 0x778758, op = 0x30a2d8, args = 0x778774, rho = 0xb47598),
line 690 in "eval.c"
[18] Rf_eval(e = 0x778758, rho = 0xb47598), line 400 in "eval.c"
[19] do_begin(call = 0x77873c, op = 0x31b514, args = 0x778720, rho =
0xb47598), line 887 in "eval.c"
[20] Rf_eval(e = 0x77873c, rho = 0xb47598), line 400 in "eval.c"
[21] do_if(call = 0x7783a0, op = 0x30a2d8, args = 0x7783bc, rho = 0xb47598),
line 692 in "eval.c"
[22] Rf_eval(e = 0x7783a0, rho = 0xb47598), line 400 in "eval.c"
[23] do_begin(call = 0x77778c, op = 0x31b514, args = 0x778384, rho =
0xb47598), line 887 in "eval.c"
[24] Rf_eval(e = 0x77778c, rho = 0xb47598), line 400 in "eval.c"
[25] Rf_applyClosure(call = 0x77a610, op = 0x7782a4, arglist = 0xb48564, rho =
0xb54188, suppliedenv = 0x30a888), line 591 in "eval.c"
[26] Rf_eval(e = 0x77a610, rho = 0xb54188), line 435 in "eval.c"
[27] do_begin(call = 0x778e88, op = 0x31b514, args = 0x77a5f4, rho =
0xb54188), line 887 in "eval.c"
[28] Rf_eval(e = 0x778e88, rho = 0xb54188), line 400 in "eval.c"
[29] Rf_applyClosure(call = 0xb54b04, op = 0x77afe0, arglist = 0xb53cf0, rho =
0x32a4bc, suppliedenv = 0x30a888), line 591 in "eval.c"
[30] Rf_eval(e = 0xb54b04, rho = 0x32a4bc), line 435 in "eval.c"
[31] R_ReplConsole(rho = 0x32a4bc, savestack = 0, browselevel = 0), line 187
in "main.c"
[32] run_Rmainloop(), line 499 in "main.c"
[33] Rf_mainloop(), line 506 in "main.c"
[34] main(ac = 3, av = 0xeffff51c), line 90 in "system.c"
(dbx)
-------------------------------------------------------------------------------------------------
same settings (in config.site)
configures and compiles without problems for
a sun sparc solaris 2.7 box. odd.
but I need the solaris 2.6 version...
if I tried something stupid,
any hint is welcome!
best regards.
martin rother.
--
Martin Rother (rother at gfz-potsdam.de) 0331/ 288-1272 Division 2.3
GeoForschungsZentrum Potsdam, Germany
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