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Diego Kuonen

1999-Sep-07 18:30 UTC

[R] R-0.65.0 on mips-sgi-irix6.5: Error code 1 (bu21)

Dear all,

I want to install R-0.65.0 on mips-sgi-irix6.5 (SGI IRIX 6.5 IP32),
but it doesn't work !!!


I run the following configure call:


<146>: ./configure --prefix=/usr/people40c/kuonen/Software/bin

  ...

R is now configured for mips-sgi-irix6.5

  Source directory:         .
  Installation directory:   /usr/people40c/kuonen/Software/bin
  C compiler:               gcc  -g -O2
  FORTRAN compiler:         f77
  Gnome support:            no


Ok, then I simply type


<147>:R-0.65.0: make
        gcc -I. -I../include -I../../src/include  -DHAVE_CONFIG_H  -g -O2 -c
S_compat.c -o S_compat.o
In file included from ../include/S.h:47,
                 from ../include/S_compat.h:28,
                 from S_compat.c:28:
/usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:681: conflicting
types for `srandom'
/usr/include/stdlib.h:234: previous declaration of `srandom'
/usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:682: conflicting
types for `initstate'
/usr/include/stdlib.h:226: previous declaration of `initstate'
/usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:683: conflicting
types for `setstate'
/usr/include/stdlib.h:233: previous declaration of `setstate'
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)



I know that these errors mean that the functions srandom and *state are being
declared twice with different types; giving me  the relevant files and line
numbers....

But, as I am not root on the machine, I'm unable to change the system files,
but
I tried to change the header files in

   /usr/people40c/kuonen/Software/R-0.65.0/include

in order to comment lines where "math.h" occurred (as the declaration
in
/usr/include/stdlib.h may be sufficient), but each time re-running
"make", it produced the same error messages...  May there be a
possibility
to use "make" without rebuilding the header files in

   /usr/people40c/kuonen/Software/R-0.65.0/include

, or is there a simpler solution to my problem? Maybe just an argument to
be passed to gcc?


I appreciate your help!

Have a great day,

  Diego



P.S.: using "egcs" instead of the "normal gcc" did produce
the same...


--
------------------------------------------------------------
Diego Kuonen, DMA-Ecublens, EPFL, 1015 Lausanne, Switzerland

Diego.Kuonen at epfl.ch                        Diego at Kuonen.com
http://statwww.epfl.ch/people/kuonen/

"You have to live on the
edge of reality - to
make your dreams
come true!"                              Powered by Linux...
------------------------------------------------------------



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Kurt Hornik

1999-Sep-09 08:00 UTC

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[R] R-0.65.0 on mips-sgi-irix6.5: Error code 1 (bu21)

>>>>> Diego Kuonen writes:
> Dear all,
> I want to install R-0.65.0 on mips-sgi-irix6.5 (SGI IRIX 6.5 IP32),
> but it doesn't work !!!
> I run the following configure call:
> <146>: ./configure --prefix=/usr/people40c/kuonen/Software/bin
>   ...
> R is now configured for mips-sgi-irix6.5
>   Source directory:         .
>   Installation directory:   /usr/people40c/kuonen/Software/bin
>   C compiler:               gcc  -g -O2
>   FORTRAN compiler:         f77
>   Gnome support:            no
> Ok, then I simply type
> <147>:R-0.65.0: make
>         gcc -I. -I../include -I../../src/include  -DHAVE_CONFIG_H  -g -O2
-c S_compat.c -o S_compat.o
> In file included from ../include/S.h:47,
>                  from ../include/S_compat.h:28,
>                  from S_compat.c:28:
> /usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:681:
conflicting types for `srandom'
> /usr/include/stdlib.h:234: previous declaration of `srandom'
> /usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:682:
conflicting types for `initstate'
> /usr/include/stdlib.h:226: previous declaration of `initstate'
> /usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:683:
conflicting types for `setstate'
> /usr/include/stdlib.h:233: previous declaration of `setstate'
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> *** Error code 1 (bu21)
> I know that these errors mean that the functions srandom and *state
> are being declared twice with different types; giving me the relevant
> files and line numbers....
Hmm ... looks like gcc's math.h is trying to fix a ``broken'' system
header file.  I am not sure what ANSI thinks about srandom, my Linux
manpage says

       #include <stdlib.h>

       long int random(void);
       void srandom(unsigned int seed);
       char *initstate(unsigned int seed, char *state, size_t n);
       char *setstate(char *state);

What do the conflicting header files think?

Duncan and whoever else has access to SGI---anything special one needs
on SGI?

-k
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
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Peter Dalgaard BSA

1999-Sep-09 09:17 UTC

head link

[R] R-0.65.0 on mips-sgi-irix6.5: Error code 1 (bu21)

Diego Kuonen <Diego.Kuonen at epfl.ch> writes:
> Dear all,
> 
> I want to install R-0.65.0 on mips-sgi-irix6.5 (SGI IRIX 6.5 IP32),                                             ***
> /usr/local/lib/gcc-lib/mips-sgi-irix6.2/2.8.1/include/math.h:681:                                      ***

I think that is your problem. Your OS got upgraded but not your gcc.
GCC looks at the system include files and generates its own ones from
them. If the system files change, one gets in trouble. We've
previously seen very similar effects between Solaris versions.
> But, as I am not root on the machine, I'm unable to change the system
files
Well, I suggest that you go and talk to the person who is and say that
the system C compiler is defunct... 

-- 
   O__  ---- Peter Dalgaard             Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)             FAX: (+45) 35327907
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