R help - Apr 2019 - Help installing netReg

Good evening,

 I am having problems with downloading the package used to generate
regression models on R. The following is the error message I received. I
tried installing BiocManager instead as suggested, but this too did not
work. Any ideas?

The downloaded binary packages are in
C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
installation path not writeable, unable to update packages: class, cluster,
codetools, foreign,
  lattice, MASS, Matrix, mgcv, nlme, rpart, survival
Warning message:
'biocLite' is deprecated.
Use 'BiocManager::install' instead.
See help("Deprecated")

Best,

Spencer

	[[alternative HTML version deleted]]

On 4/14/19 3:20 PM, Spencer Brackett wrote:
> Good evening,
>
>   I am having problems with downloading the package used to generate
> regression models on R. The following is the error message I received. I
> tried installing BiocManager instead as suggested, but this too did not
> work. Any ideas?
>
> The downloaded binary packages are in
> C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
> installation path not writeable, unable to update packages: class, cluster,
> codetools, foreign,
>    lattice, MASS, Matrix, mgcv, nlme, rpart, survival
> Warning message:
> 'biocLite' is deprecated.
> Use 'BiocManager::install' instead.
> See help("Deprecated")

Since you did not include the code that provoked this message we can 
only guess that you did in fact use `bioLite`. We also cannot tell what 
you mean by "problems with downloading the package used to generate 
regression models on R". The typical first step is to use the glm or lm 
function for this task and those are both in the stats package which is 
installed with the base version of R and is loaded by default when R is 
started up.

"

Have you tried following the suggestion at the end of the message?


And do read the Posting Guide and include "commented, minimal, 
self-contained, reproducible code."


-- 

David.
>
> Best,
>
> Spencer
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

My apologies... here is the full code in summary

install.packages("ggplot2")
install.packages("ggplot2")
source("https://bioconductor.org/biocLite.R")
?BiocUpgrade
source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
source("https://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
source("https://bioconductor.org/bioLite.R")
biocLite("netReg")
help("Deprecated")
'BiocManager::install'
biocLite("netReg")
help("oldName-deprecated")
???oldName-deprecated?
.Deprecated(new, package=NULL, msg,
old = as.character(sys.call(sys.parent()))[1L])

Best,

Spencer



On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius at
comcast.net>
wrote:
>
> On 4/14/19 3:20 PM, Spencer Brackett wrote:
> > Good evening,
> >
> >   I am having problems with downloading the package used to generate
> > regression models on R. The following is the error message I received.
I
> > tried installing BiocManager instead as suggested, but this too did
not
> > work. Any ideas?
> >
> > The downloaded binary packages are in
> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
> > installation path not writeable, unable to update packages: class,
> cluster,
> > codetools, foreign,
> >    lattice, MASS, Matrix, mgcv, nlme, rpart, survival
> > Warning message:
> > 'biocLite' is deprecated.
> > Use 'BiocManager::install' instead.
> > See help("Deprecated")
>
>
> Since you did not include the code that provoked this message we can
> only guess that you did in fact use `bioLite`. We also cannot tell what
> you mean by "problems with downloading the package used to generate
> regression models on R". The typical first step is to use the glm or
lm
> function for this task and those are both in the stats package which is
> installed with the base version of R and is loaded by default when R is
> started up.
>
> "
>
> Have you tried following the suggestion at the end of the message?
>
>
> And do read the Posting Guide and include "commented, minimal,
> self-contained, reproducible code."
>
>
> --
>
> David.
>
> >
> > Best,
> >
> > Spencer
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
	[[alternative HTML version deleted]]