Hi Rxperts,
I am trying to install 'rgl' package in Ubuntu.. Would highly appreciate
your assistance .. I tried several leads available on various discussion
fora and nothing helped so far.
* installing *source* package ?rgl? ...checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers
checking GL/gl.h usability... yes
checking GL/gl.h presence... yes
checking for GL/gl.h... yes
checking GL/glu.h usability... yes
checking GL/glu.h presence... yes
checking for GL/glu.h... yes
checking for glEnd in -lGL... noconfigure: error: missing required
library GLERROR: configuration failed for package ?rgl?* removing
?/data/R/lib/rgl?Warning in install.packages :
installation of package ?rgl? had non-zero exit status
Checking the system dependencies based on README..
system('dpkg -l |grep libgl1')ii libgl1-mesa-dev
10.1.3-0ubuntu0.6 amd64 free
implementation of the OpenGL API -- GLX development files
> system('dpkg -l |grep libglu1')ii libglu1-mesa:amd64
9.0.0-2 amd64 Mesa OpenGL utility library
(GLU)
ii libglu1-mesa-dev 9.0.0-2
amd64 Mesa OpenGL utility library -- development
files
> system('dpkg -l |grep libpng')ii libpng12-0:amd64
1.2.50-1ubuntu2.14.04.2 amd64 PNG library - runtime
ii libpng12-dev 1.2.50-1ubuntu2.14.04.2
amd64 PNG library - development
I also tried installing .. using the following command..
install.packages("rgl",dep=T,
INSTALL_opts="--no-multiarch",
configure.args=c(rgl="--with-gl-includes=/usr/include/GL"))
Thanks so much for your help!
Santosh
[[alternative HTML version deleted]]
On 23/11/2017 6:05 PM, Santosh wrote:> Hi Rxperts, > I am trying to install 'rgl' package in Ubuntu.. Would highly appreciate > your assistance .. I tried several leads available on various discussion > fora and nothing helped so far.Your message is really hard to follow, since you posted in HTML. You need the OpenGL development packages. On Ubuntu, that probably means MesaGL, but I don't know the names of the development packages. Duncan Murdoch> > > * installing *source* package ?rgl? ...checking for gcc... gcc -std=gnu99 > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc -std=gnu99 accepts -g... yes > checking for gcc -std=gnu99 option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -std=gnu99 -E > checking for gcc... (cached) gcc -std=gnu99 > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc -std=gnu99 accepts -g... (cached) yes > checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed > checking for libpng-config... yes > configure: using libpng-config > configure: using libpng dynamic linkage > checking for X... libraries , headers > checking GL/gl.h usability... yes > checking GL/gl.h presence... yes > checking for GL/gl.h... yes > checking GL/glu.h usability... yes > checking GL/glu.h presence... yes > checking for GL/glu.h... yes > checking for glEnd in -lGL... noconfigure: error: missing required > library GLERROR: configuration failed for package ?rgl?* removing > ?/data/R/lib/rgl?Warning in install.packages : > installation of package ?rgl? had non-zero exit status > > Checking the system dependencies based on README.. > > system('dpkg -l |grep libgl1')ii libgl1-mesa-dev > 10.1.3-0ubuntu0.6 amd64 free > implementation of the OpenGL API -- GLX development files > >> system('dpkg -l |grep libglu1')ii libglu1-mesa:amd64 9.0.0-2 amd64 Mesa OpenGL utility library (GLU) > ii libglu1-mesa-dev 9.0.0-2 > amd64 Mesa OpenGL utility library -- development > files > >> system('dpkg -l |grep libpng')ii libpng12-0:amd64 1.2.50-1ubuntu2.14.04.2 amd64 PNG library - runtime > ii libpng12-dev 1.2.50-1ubuntu2.14.04.2 > amd64 PNG library - development > > I also tried installing .. using the following command.. > install.packages("rgl",dep=T, > INSTALL_opts="--no-multiarch", > configure.args=c(rgl="--with-gl-includes=/usr/include/GL")) > > Thanks so much for your help! > Santosh > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
On 24/11/17 12:10, Duncan Murdoch wrote:> On 23/11/2017 6:05 PM, Santosh wrote: >> Hi Rxperts, >> I am trying to install 'rgl' package in Ubuntu.. Would highly appreciate >> your assistance .. I tried several leads available on various discussion >> fora and nothing helped so far. > > Your message is really hard to follow, since you posted in HTML.? You > need the OpenGL development packages.? On Ubuntu, that probably means > MesaGL, but I don't know the names of the development packages. > > Duncan Murdoch >The installation of rgl runs without complaint on my system, so apparently I have whatever libraries are needed. I did "apt-show-versions | grep mesa" on my laptop (a trick I just learned from Berwin Turlach; thanks Berwin!) and got a slew of bumff:> libegl1-mesa:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > libegl1-mesa-drivers:amd64/xenial-updates 12.0.6-0ubuntu0.16.04.1 uptodate > libgl1-mesa-dev:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > libgl1-mesa-dri:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > libgl1-mesa-glx:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > libglapi-mesa:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > libglu1-mesa:amd64/xenial 9.0.0-2.1 uptodate > libglu1-mesa-dev:amd64/xenial 9.0.0-2.1 uptodate > libwayland-egl1-mesa:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > mesa-common-dev:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate > mesa-utils:amd64/xenial 8.3.0-1 uptodate > mesa-vdpau-drivers:amd64/xenial-updates 17.0.7-0ubuntu0.16.04.2 uptodate(There were also a bunch of lines referring to i386 versions not being installed; I deleted these to save space.) So it would seem that you need to do at least: sudo apt-get install libegl1-mesa sudo apt-get install libegl1-mesa-dev Doing this may result in the other bumff that is referred to getting installed automatically. Try it and see if it works. If not, keep doing the sudo apt-get install thing to the other bits and pieces until it does work. Hope this helps; kind of a case of the blind leading the blind, but I *think* this should get you going with rgl. cheers, Rolf Turner -- Technical Editor ANZJS Department of Statistics University of Auckland Phone: +64-9-373-7599 ext. 88276>> >> >> * installing *source* package ?rgl? ...checking for gcc... gcc -std=gnu99 >> checking whether the C compiler works... yes >> checking for C compiler default output file name... a.out >> checking for suffix of executables... >> checking whether we are cross compiling... no >> checking for suffix of object files... o >> checking whether we are using the GNU C compiler... yes >> checking whether gcc -std=gnu99 accepts -g... yes >> checking for gcc -std=gnu99 option to accept ISO C89... none needed >> checking how to run the C preprocessor... gcc -std=gnu99 -E >> checking for gcc... (cached) gcc -std=gnu99 >> checking whether we are using the GNU C compiler... (cached) yes >> checking whether gcc -std=gnu99 accepts -g... (cached) yes >> checking for gcc -std=gnu99 option to accept ISO C89... (cached) none >> needed >> checking for libpng-config... yes >> configure: using libpng-config >> configure: using libpng dynamic linkage >> checking for X... libraries , headers >> checking GL/gl.h usability... yes >> checking GL/gl.h presence... yes >> checking for GL/gl.h... yes >> checking GL/glu.h usability... yes >> checking GL/glu.h presence... yes >> checking for GL/glu.h... yes >> checking for glEnd in -lGL... noconfigure: error: missing required >> library GLERROR: configuration failed for package ?rgl?* removing >> ?/data/R/lib/rgl?Warning in install.packages : >> ?? installation of package ?rgl? had non-zero exit status >> >> Checking the system dependencies based on README.. >> >> system('dpkg -l |grep? libgl1')ii? libgl1-mesa-dev >> ?? 10.1.3-0ubuntu0.6?????????????????????? amd64??????? free >> implementation of the OpenGL API -- GLX development files >> >>> system('dpkg -l |grep? libglu1')ii >>> libglu1-mesa:amd64 >>> 9.0.0-2???????????????????????????????? amd64??????? Mesa OpenGL >>> utility library (GLU) >> ii? libglu1-mesa-dev????????????????????? 9.0.0-2 >> ??????????? amd64??????? Mesa OpenGL utility library -- development >> files >> >>> system('dpkg -l |grep? libpng')ii >>> libpng12-0:amd64 >>> 1.2.50-1ubuntu2.14.04.2???????????????? amd64??????? PNG library - >>> runtime >> ii? libpng12-dev????????????????????????? 1.2.50-1ubuntu2.14.04.2 >> ??????????? amd64??????? PNG library - development >> >> I also tried installing .. using the following command.. >> install.packages("rgl",dep=T, >> INSTALL_opts="--no-multiarch", >> configure.args=c(rgl="--with-gl-includes=/usr/include/GL"))
On Nov 23, 2017 6:16 PM, "Duncan Murdoch" <murdoch.duncan at gmail.com> wrote: On 23/11/2017 6:05 PM, Santosh wrote:> Hi Rxperts, > I am trying to install 'rgl' package in Ubuntu.. Would highly appreciate > your assistance .. I tried several leads available on various discussion > fora and nothing helped so far. >Your message is really hard to follow, since you posted in HTML. You need the OpenGL development packages. On Ubuntu, that probably means MesaGL, but I don't know the names of the development packages. Fortunately there is no need to memorize them: apt-get build-dep r-cran-rgl should be all you need. Duncan Murdoch> > * installing *source* package ?rgl? ...checking for gcc... gcc -std=gnu99 > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc -std=gnu99 accepts -g... yes > checking for gcc -std=gnu99 option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -std=gnu99 -E > checking for gcc... (cached) gcc -std=gnu99 > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc -std=gnu99 accepts -g... (cached) yes > checking for gcc -std=gnu99 option to accept ISO C89... (cached) none > needed > checking for libpng-config... yes > configure: using libpng-config > configure: using libpng dynamic linkage > checking for X... libraries , headers > checking GL/gl.h usability... yes > checking GL/gl.h presence... yes > checking for GL/gl.h... yes > checking GL/glu.h usability... yes > checking GL/glu.h presence... yes > checking for GL/glu.h... yes > checking for glEnd in -lGL... noconfigure: error: missing required > library GLERROR: configuration failed for package ?rgl?* removing > ?/data/R/lib/rgl?Warning in install.packages : > installation of package ?rgl? had non-zero exit status > > Checking the system dependencies based on README.. > > system('dpkg -l |grep libgl1')ii libgl1-mesa-dev > 10.1.3-0ubuntu0.6 amd64 free > implementation of the OpenGL API -- GLX development files > > system('dpkg -l |grep libglu1')ii libglu1-mesa:amd64 >> 9.0.0-2 amd64 Mesa OpenGL utility >> library (GLU) >> > ii libglu1-mesa-dev 9.0.0-2 > amd64 Mesa OpenGL utility library -- development > files > > system('dpkg -l |grep libpng')ii libpng12-0:amd64 >> 1.2.50-1ubuntu2.14.04.2 amd64 PNG library - runtime >> > ii libpng12-dev 1.2.50-1ubuntu2.14.04.2 > amd64 PNG library - development > > I also tried installing .. using the following command.. > install.packages("rgl",dep=T, > INSTALL_opts="--no-multiarch", > configure.args=c(rgl="--with-gl-includes=/usr/include/GL")) > > Thanks so much for your help! > Santosh > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posti > ng-guide.html > and provide commented, minimal, self-contained, reproducible code. > >______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]]
On 23 November 2017 at 15:05, Santosh wrote:
| I am trying to install 'rgl' package in Ubuntu.. Would highly
appreciate
| your assistance .. I tried several leads available on various discussion
| fora and nothing helped so far.
Install the _pre-built binary package_ via
sudo apt install r-cran-rgl
Dirk
--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
Hi All, Duncan, Rolf, Ista, DIrk,
Thanks for the suggestions and I tried all of them (as suggested by Duncan,
Rolf, Ista and Dirk)... I still get similar error as before while
installing 'rgl' package.. I also tried to manually configure
"rgl" and got
an error message (please see below for the verbatim output). Would highly
any further ideas/suggestions!
*In my system, "GL" library is present under
"/usr/include/GL"*
Here are the libraries available (as suggested by Rolf)
After installing some of them, I continue to get the same error message,
please below the output messages in config.log after I ran
"./configure")
"ii r-cran-rgl 0.93.996-1
amd64 GNU R package for three-dimensional visualisation
using OpenGL"
"ii libegl1-mesa:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- runtime"
"ii libegl1-mesa-dev 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- development
files"
"ii libegl1-mesa-drivers:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- hardware drivers"
"ii libgl1-mesa-dev 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- GLX
development files"
"ii libgl1-mesa-dri:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- DRI modules"
"ii libgl1-mesa-glx:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- GLX runtime"
"ii libglapi-mesa:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the GL API -- shared library"
"ii libglu1-mesa:amd64 9.0.0-2
amd64 Mesa OpenGL utility library (GLU)"
"ii libglu1-mesa-dev 9.0.0-2
amd64 Mesa OpenGL utility library -- development files"
"ii libwayland-client0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - client library"
"ii libwayland-cursor0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - cursor library"
"ii libwayland-dev 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - development files"
"ii libwayland-egl1-mesa:amd64 10.1.3-0ubuntu0.6
amd64 implementation of the Wayland EGL platform -- runtime"
"ii libwayland-server0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - server library"
"ii mesa-common-dev 10.1.3-0ubuntu0.6
amd64 Developer documentation for Mesa"
"ii mesa-vdpau-drivers:amd64 10.1.3-0ubuntu0.6
amd64 Mesa VDPAU video acceleration drivers"
"ii mesa-utils 8.1.0-2
amd64 Miscellaneous Mesa GL utilities"
The error message when installing "rgl" library,
* installing *source* package ?rgl? ...
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers
checking GL/gl.h usability... yes
checking GL/gl.h presence... yes
checking for GL/gl.h... yes
checking GL/glu.h usability... yes
checking GL/glu.h presence... yes
checking for GL/glu.h... yes
checking for glEnd in -lGL... no
configure: error: missing required library GL
ERROR: configuration failed for package ?rgl?
* removing ?/data/R/lib/rgl?
Warning in install.packages :
installation of package ?rgl? had non-zero exit status
The error message as seen in config.log (after manually running
"./configure" under "rgl")
configure:4263: checking for glEnd in -lGL
configure:4288: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector
--param=ssp-buffer-size=4 -Wformat -Werror=format-security
-D_FORTIFY_SOURCE=2 -g -DHAVE_PNG_H -I/usr/include/libpng12
conftest.c -lGL -L/usr/lib/x86_64-linux-gnu -lpng12
-lX11>&5*/*usr/bin/ld: cannot find -lGL
collect2: error: ld returned 1 exit status
configure:4288: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define HAVE_GL_GL_H 1
| #define HAVE_GL_GLU_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char glEnd ();
| int
| main ()
| {
| return glEnd ();
| ;
| return 0;
| }configure:4298: result: no
configure:4311: error: missing required library GL
Thanks a ton, again!
Santosh
On Fri, Nov 24, 2017 at 5:13 AM, Dirk Eddelbuettel <edd at debian.org>
wrote:
>
> On 23 November 2017 at 15:05, Santosh wrote:
> | I am trying to install 'rgl' package in Ubuntu.. Would highly
appreciate
> | your assistance .. I tried several leads available on various discussion
> | fora and nothing helped so far.
>
> Install the _pre-built binary package_ via
>
> sudo apt install r-cran-rgl
>
> Dirk
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
>
[[alternative HTML version deleted]]