Hi All, Duncan, Rolf, Ista, DIrk,
Thanks for the suggestions and I tried all of them (as suggested by Duncan,
Rolf, Ista and Dirk)... I still get similar error as before while
installing 'rgl' package.. I also tried to manually configure
"rgl" and got
an error message (please see below for the verbatim output). Would highly
any further ideas/suggestions!
*In my system, "GL" library is present under
"/usr/include/GL"*
Here are the libraries available (as suggested by Rolf)
After installing some of them, I continue to get the same error message,
please below the output messages in config.log after I ran
"./configure")
"ii r-cran-rgl 0.93.996-1
amd64 GNU R package for three-dimensional visualisation
using OpenGL"
"ii libegl1-mesa:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- runtime"
"ii libegl1-mesa-dev 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- development
files"
"ii libegl1-mesa-drivers:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the EGL API -- hardware drivers"
"ii libgl1-mesa-dev 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- GLX
development files"
"ii libgl1-mesa-dri:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- DRI modules"
"ii libgl1-mesa-glx:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the OpenGL API -- GLX runtime"
"ii libglapi-mesa:amd64 10.1.3-0ubuntu0.6
amd64 free implementation of the GL API -- shared library"
"ii libglu1-mesa:amd64 9.0.0-2
amd64 Mesa OpenGL utility library (GLU)"
"ii libglu1-mesa-dev 9.0.0-2
amd64 Mesa OpenGL utility library -- development files"
"ii libwayland-client0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - client library"
"ii libwayland-cursor0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - cursor library"
"ii libwayland-dev 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - development files"
"ii libwayland-egl1-mesa:amd64 10.1.3-0ubuntu0.6
amd64 implementation of the Wayland EGL platform -- runtime"
"ii libwayland-server0:amd64 1.4.0-1ubuntu1
amd64 wayland compositor infrastructure - server library"
"ii mesa-common-dev 10.1.3-0ubuntu0.6
amd64 Developer documentation for Mesa"
"ii mesa-vdpau-drivers:amd64 10.1.3-0ubuntu0.6
amd64 Mesa VDPAU video acceleration drivers"
"ii mesa-utils 8.1.0-2
amd64 Miscellaneous Mesa GL utilities"
The error message when installing "rgl" library,
* installing *source* package ?rgl? ...
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers
checking GL/gl.h usability... yes
checking GL/gl.h presence... yes
checking for GL/gl.h... yes
checking GL/glu.h usability... yes
checking GL/glu.h presence... yes
checking for GL/glu.h... yes
checking for glEnd in -lGL... no
configure: error: missing required library GL
ERROR: configuration failed for package ?rgl?
* removing ?/data/R/lib/rgl?
Warning in install.packages :
installation of package ?rgl? had non-zero exit status
The error message as seen in config.log (after manually running
"./configure" under "rgl")
configure:4263: checking for glEnd in -lGL
configure:4288: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector
--param=ssp-buffer-size=4 -Wformat -Werror=format-security
-D_FORTIFY_SOURCE=2 -g -DHAVE_PNG_H -I/usr/include/libpng12
conftest.c -lGL -L/usr/lib/x86_64-linux-gnu -lpng12
-lX11>&5*/*usr/bin/ld: cannot find -lGL
collect2: error: ld returned 1 exit status
configure:4288: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define HAVE_GL_GL_H 1
| #define HAVE_GL_GLU_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char glEnd ();
| int
| main ()
| {
| return glEnd ();
| ;
| return 0;
| }configure:4298: result: no
configure:4311: error: missing required library GL
Thanks a ton, again!
Santosh
On Fri, Nov 24, 2017 at 5:13 AM, Dirk Eddelbuettel <edd at debian.org>
wrote:
>
> On 23 November 2017 at 15:05, Santosh wrote:
> | I am trying to install 'rgl' package in Ubuntu.. Would highly
appreciate
> | your assistance .. I tried several leads available on various discussion
> | fora and nothing helped so far.
>
> Install the _pre-built binary package_ via
>
> sudo apt install r-cran-rgl
>
> Dirk
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
>
[[alternative HTML version deleted]]
On 24/11/2017 2:30 PM, Santosh wrote:> Hi All, Duncan, Rolf, Ista, DIrk, > > Thanks for the suggestions and I tried all of them (as suggested by Duncan, > Rolf, Ista and Dirk)... I still get similar error as before while > installing 'rgl' package.. I also tried to manually configure "rgl" and got > an error message (please see below for the verbatim output). Would highly > any further ideas/suggestions! > > *In my system, "GL" library is present under "/usr/include/GL"*That's the include file. The error is saying you don't have libGL.so, which it is looking for in /usr/lib/x86_64-linux-gnu. Do you have that file? Is it there, and marked as executable? It's probably a symbolic link; on an old Ubuntu system I just checked, it points to mesa/libGL.so, which is also a symlink, pointing to mesa/libGL.so.1.2.0, which is executable. Duncan Murdoch> > Here are the libraries available (as suggested by Rolf) > > After installing some of them, I continue to get the same error message, > please below the output messages in config.log after I ran "./configure") > > > "ii r-cran-rgl 0.93.996-1 > amd64 GNU R package for three-dimensional visualisation > using OpenGL" > > "ii libegl1-mesa:amd64 10.1.3-0ubuntu0.6 > amd64 free implementation of the EGL API -- runtime" > > "ii libegl1-mesa-dev 10.1.3-0ubuntu0.6 > amd64 free implementation of the EGL API -- development files" > > "ii libegl1-mesa-drivers:amd64 10.1.3-0ubuntu0.6 > amd64 free implementation of the EGL API -- hardware drivers" > > "ii libgl1-mesa-dev 10.1.3-0ubuntu0.6 > amd64 free implementation of the OpenGL API -- GLX > development files" > > "ii libgl1-mesa-dri:amd64 10.1.3-0ubuntu0.6 > amd64 free implementation of the OpenGL API -- DRI modules" > > > "ii libgl1-mesa-glx:amd64 10.1.3-0ubuntu0.6 > amd64 free implementation of the OpenGL API -- GLX runtime" > > > "ii libglapi-mesa:amd64 10.1.3-0ubuntu0.6 > amd64 free implementation of the GL API -- shared library" > > "ii libglu1-mesa:amd64 9.0.0-2 > amd64 Mesa OpenGL utility library (GLU)" > > "ii libglu1-mesa-dev 9.0.0-2 > amd64 Mesa OpenGL utility library -- development files" > > "ii libwayland-client0:amd64 1.4.0-1ubuntu1 > amd64 wayland compositor infrastructure - client library" > > "ii libwayland-cursor0:amd64 1.4.0-1ubuntu1 > amd64 wayland compositor infrastructure - cursor library" > > "ii libwayland-dev 1.4.0-1ubuntu1 > amd64 wayland compositor infrastructure - development files" > > "ii libwayland-egl1-mesa:amd64 10.1.3-0ubuntu0.6 > amd64 implementation of the Wayland EGL platform -- runtime" > > "ii libwayland-server0:amd64 1.4.0-1ubuntu1 > amd64 wayland compositor infrastructure - server library" > > "ii mesa-common-dev 10.1.3-0ubuntu0.6 > amd64 Developer documentation for Mesa" > > "ii mesa-vdpau-drivers:amd64 10.1.3-0ubuntu0.6 > amd64 Mesa VDPAU video acceleration drivers" > > "ii mesa-utils 8.1.0-2 > amd64 Miscellaneous Mesa GL utilities" > > > The error message when installing "rgl" library, > > * installing *source* package ?rgl? ... > > checking for gcc... gcc -std=gnu99 > > checking whether the C compiler works... yes > > checking for C compiler default output file name... a.out > > checking for suffix of executables... > > checking whether we are cross compiling... no > > checking for suffix of object files... o > > checking whether we are using the GNU C compiler... yes > > checking whether gcc -std=gnu99 accepts -g... yes > > checking for gcc -std=gnu99 option to accept ISO C89... none needed > > checking how to run the C preprocessor... gcc -std=gnu99 -E > > checking for gcc... (cached) gcc -std=gnu99 > > checking whether we are using the GNU C compiler... (cached) yes > > checking whether gcc -std=gnu99 accepts -g... (cached) yes > > checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed > > checking for libpng-config... yes > > configure: using libpng-config > > configure: using libpng dynamic linkage > > checking for X... libraries , headers > > checking GL/gl.h usability... yes > > checking GL/gl.h presence... yes > > checking for GL/gl.h... yes > > checking GL/glu.h usability... yes > > checking GL/glu.h presence... yes > > checking for GL/glu.h... yes > > checking for glEnd in -lGL... no > > configure: error: missing required library GL > > ERROR: configuration failed for package ?rgl? > > * removing ?/data/R/lib/rgl? > > Warning in install.packages : > > installation of package ?rgl? had non-zero exit status > > > The error message as seen in config.log (after manually running > "./configure" under "rgl") > > configure:4263: checking for glEnd in -lGL > configure:4288: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -g -DHAVE_PNG_H -I/usr/include/libpng12 > conftest.c -lGL -L/usr/lib/x86_64-linux-gnu -lpng12 -lX11 >> &5*/*usr/bin/ld: cannot find -lGL > collect2: error: ld returned 1 exit status > configure:4288: $? = 1 > configure: failed program was: > | /* confdefs.h */ > | #define PACKAGE_NAME "" > | #define PACKAGE_TARNAME "" > | #define PACKAGE_VERSION "" > | #define PACKAGE_STRING "" > | #define PACKAGE_BUGREPORT "" > | #define PACKAGE_URL "" > | #define HAVE_GL_GL_H 1 > | #define HAVE_GL_GLU_H 1 > | /* end confdefs.h. */ > | > | /* Override any GCC internal prototype to avoid an error. > | Use char because int might match the return type of a GCC > | builtin and then its argument prototype would still apply. */ > | #ifdef __cplusplus > | extern "C" > | #endif > | char glEnd (); > | int > | main () > | { > | return glEnd (); > | ; > | return 0; > | }configure:4298: result: no > configure:4311: error: missing required library GL > > Thanks a ton, again! > Santosh > > On Fri, Nov 24, 2017 at 5:13 AM, Dirk Eddelbuettel <edd at debian.org> wrote: > >> >> On 23 November 2017 at 15:05, Santosh wrote: >> | I am trying to install 'rgl' package in Ubuntu.. Would highly appreciate >> | your assistance .. I tried several leads available on various discussion >> | fora and nothing helped so far. >> >> Install the _pre-built binary package_ via >> >> sudo apt install r-cran-rgl >> >> Dirk >> >> -- >> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org >> > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
Hi Duncan, and others.. Yes, below are the search results. it is linked to mesa/libGL.so and is again point to libGL.so -> libGL.so.1.2.0 . However, I could not find libGL.so.1.2.0 or its source. Where is libGL.so.1.2.0 expected to be located? /usr/lib/libGL.so.1 /usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGL.so.1 /usr/lib/x86_64-linux-gnu/mesa/libGL.so Thanks again, Santosh On Fri, Nov 24, 2017 at 12:39 PM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote:> On 24/11/2017 2:30 PM, Santosh wrote: > >> Hi All, Duncan, Rolf, Ista, DIrk, >> >> Thanks for the suggestions and I tried all of them (as suggested by >> Duncan, >> Rolf, Ista and Dirk)... I still get similar error as before while >> installing 'rgl' package.. I also tried to manually configure "rgl" and >> got >> an error message (please see below for the verbatim output). Would highly >> any further ideas/suggestions! >> >> *In my system, "GL" library is present under "/usr/include/GL"* >> > > That's the include file. The error is saying you don't have libGL.so, > which it is looking for in /usr/lib/x86_64-linux-gnu. Do you have that > file? Is it there, and marked as executable? > > It's probably a symbolic link; on an old Ubuntu system I just checked, it > points to mesa/libGL.so, which is also a symlink, pointing to > mesa/libGL.so.1.2.0, which is executable. > > Duncan Murdoch > > > >> Here are the libraries available (as suggested by Rolf) >> >> After installing some of them, I continue to get the same error message, >> please below the output messages in config.log after I ran "./configure") >> >> >> "ii r-cran-rgl 0.93.996-1 >> amd64 GNU R package for three-dimensional visualisation >> using OpenGL" >> >> "ii libegl1-mesa:amd64 10.1.3-0ubuntu0.6 >> amd64 free implementation of the EGL API -- runtime" >> >> "ii libegl1-mesa-dev 10.1.3-0ubuntu0.6 >> amd64 free implementation of the EGL API -- development >> files" >> >> "ii libegl1-mesa-drivers:amd64 10.1.3-0ubuntu0.6 >> amd64 free implementation of the EGL API -- hardware >> drivers" >> >> "ii libgl1-mesa-dev 10.1.3-0ubuntu0.6 >> amd64 free implementation of the OpenGL API -- GLX >> development files" >> >> "ii libgl1-mesa-dri:amd64 10.1.3-0ubuntu0.6 >> amd64 free implementation of the OpenGL API -- DRI modules" >> >> >> "ii libgl1-mesa-glx:amd64 10.1.3-0ubuntu0.6 >> amd64 free implementation of the OpenGL API -- GLX runtime" >> >> >> "ii libglapi-mesa:amd64 10.1.3-0ubuntu0.6 >> amd64 free implementation of the GL API -- shared library" >> >> "ii libglu1-mesa:amd64 9.0.0-2 >> amd64 Mesa OpenGL utility library (GLU)" >> >> "ii libglu1-mesa-dev 9.0.0-2 >> amd64 Mesa OpenGL utility library -- development files" >> >> "ii libwayland-client0:amd64 1.4.0-1ubuntu1 >> amd64 wayland compositor infrastructure - client library" >> >> "ii libwayland-cursor0:amd64 1.4.0-1ubuntu1 >> amd64 wayland compositor infrastructure - cursor library" >> >> "ii libwayland-dev 1.4.0-1ubuntu1 >> amd64 wayland compositor infrastructure - development >> files" >> >> "ii libwayland-egl1-mesa:amd64 10.1.3-0ubuntu0.6 >> amd64 implementation of the Wayland EGL platform -- >> runtime" >> >> "ii libwayland-server0:amd64 1.4.0-1ubuntu1 >> amd64 wayland compositor infrastructure - server library" >> >> "ii mesa-common-dev 10.1.3-0ubuntu0.6 >> amd64 Developer documentation for Mesa" >> >> "ii mesa-vdpau-drivers:amd64 10.1.3-0ubuntu0.6 >> amd64 Mesa VDPAU video acceleration drivers" >> >> "ii mesa-utils 8.1.0-2 >> amd64 Miscellaneous Mesa GL utilities" >> >> >> The error message when installing "rgl" library, >> >> * installing *source* package ?rgl? ... >> >> checking for gcc... gcc -std=gnu99 >> >> checking whether the C compiler works... yes >> >> checking for C compiler default output file name... a.out >> >> checking for suffix of executables... >> >> checking whether we are cross compiling... no >> >> checking for suffix of object files... o >> >> checking whether we are using the GNU C compiler... yes >> >> checking whether gcc -std=gnu99 accepts -g... yes >> >> checking for gcc -std=gnu99 option to accept ISO C89... none needed >> >> checking how to run the C preprocessor... gcc -std=gnu99 -E >> >> checking for gcc... (cached) gcc -std=gnu99 >> >> checking whether we are using the GNU C compiler... (cached) yes >> >> checking whether gcc -std=gnu99 accepts -g... (cached) yes >> >> checking for gcc -std=gnu99 option to accept ISO C89... (cached) none >> needed >> >> checking for libpng-config... yes >> >> configure: using libpng-config >> >> configure: using libpng dynamic linkage >> >> checking for X... libraries , headers >> >> checking GL/gl.h usability... yes >> >> checking GL/gl.h presence... yes >> >> checking for GL/gl.h... yes >> >> checking GL/glu.h usability... yes >> >> checking GL/glu.h presence... yes >> >> checking for GL/glu.h... yes >> >> checking for glEnd in -lGL... no >> >> configure: error: missing required library GL >> >> ERROR: configuration failed for package ?rgl? >> >> * removing ?/data/R/lib/rgl? >> >> Warning in install.packages : >> >> installation of package ?rgl? had non-zero exit status >> >> >> The error message as seen in config.log (after manually running >> "./configure" under "rgl") >> >> configure:4263: checking for glEnd in -lGL >> configure:4288: gcc -std=gnu99 -o conftest -g -O2 -fstack-protector >> --param=ssp-buffer-size=4 -Wformat -Werror=format-security >> -D_FORTIFY_SOURCE=2 -g -DHAVE_PNG_H -I/usr/include/libpng12 >> conftest.c -lGL -L/usr/lib/x86_64-linux-gnu -lpng12 -lX11 >> >>> &5*/*usr/bin/ld: cannot find -lGL >>> >> collect2: error: ld returned 1 exit status >> configure:4288: $? = 1 >> configure: failed program was: >> | /* confdefs.h */ >> | #define PACKAGE_NAME "" >> | #define PACKAGE_TARNAME "" >> | #define PACKAGE_VERSION "" >> | #define PACKAGE_STRING "" >> | #define PACKAGE_BUGREPORT "" >> | #define PACKAGE_URL "" >> | #define HAVE_GL_GL_H 1 >> | #define HAVE_GL_GLU_H 1 >> | /* end confdefs.h. */ >> | >> | /* Override any GCC internal prototype to avoid an error. >> | Use char because int might match the return type of a GCC >> | builtin and then its argument prototype would still apply. */ >> | #ifdef __cplusplus >> | extern "C" >> | #endif >> | char glEnd (); >> | int >> | main () >> | { >> | return glEnd (); >> | ; >> | return 0; >> | }configure:4298: result: no >> configure:4311: error: missing required library GL >> >> Thanks a ton, again! >> Santosh >> >> On Fri, Nov 24, 2017 at 5:13 AM, Dirk Eddelbuettel <edd at debian.org> >> wrote: >> >> >>> On 23 November 2017 at 15:05, Santosh wrote: >>> | I am trying to install 'rgl' package in Ubuntu.. Would highly >>> appreciate >>> | your assistance .. I tried several leads available on various >>> discussion >>> | fora and nothing helped so far. >>> >>> Install the _pre-built binary package_ via >>> >>> sudo apt install r-cran-rgl >>> >>> Dirk >>> >>> -- >>> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org >>> >>> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posti >> ng-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> >> >[[alternative HTML version deleted]]
On 24 November 2017 at 11:30, Santosh wrote: | Hi All, Duncan, Rolf, Ista, DIrk, | | Thanks for the suggestions and I tried all of them (as suggested by Duncan, | Rolf, Ista and Dirk)... I still get similar error as before while | installing 'rgl' package.. I also tried to manually configure "rgl" and got | an error message (please see below for the verbatim output). Would highly | any further ideas/suggestions! | | *In my system, "GL" library is present under "/usr/include/GL"* | | Here are the libraries available (as suggested by Rolf) | | After installing some of them, I continue to get the same error message, | please below the output messages in config.log after I ran "./configure") | | | "ii r-cran-rgl 0.93.996-1 | amd64 GNU R package for three-dimensional visualisation | using OpenGL" That means you _have_ the rgl package installed, and can stop everything you are doing. You do _not_ need to install it from source via R. You have it from Ubuntu. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
On 24/11/2017 5:45 PM, Dirk Eddelbuettel wrote:> > On 24 November 2017 at 11:30, Santosh wrote: > | Hi All, Duncan, Rolf, Ista, DIrk, > | > | Thanks for the suggestions and I tried all of them (as suggested by Duncan, > | Rolf, Ista and Dirk)... I still get similar error as before while > | installing 'rgl' package.. I also tried to manually configure "rgl" and got > | an error message (please see below for the verbatim output). Would highly > | any further ideas/suggestions! > | > | *In my system, "GL" library is present under "/usr/include/GL"* > | > | Here are the libraries available (as suggested by Rolf) > | > | After installing some of them, I continue to get the same error message, > | please below the output messages in config.log after I ran "./configure") > | > | > | "ii r-cran-rgl 0.93.996-1 > | amd64 GNU R package for three-dimensional visualisation > | using OpenGL" > > That means you _have_ the rgl package installed, and can stop everything you > are doing. > > You do _not_ need to install it from source via R. You have it from Ubuntu. >Actually the version on CRAN is pretty old, so I'd recommend people do install it from source, getting the source from R-forge. Since that is a development site the quality varies over time, but right at this minute I would say it is better than the CRAN version. Re Santosh's error messages: it looks as though the Mesa installation is messed up. I'd recommend uninstalling it, making sure there's no remnant of Mesa anywhere, then reinstalling it. Duncan Murdoch