Hin-Tak Leung
2006-Feb-27 12:28 UTC
[Rd] method dispatch and in-place modification? - unclass, RemoveClass, getDataPart, method dispatch
I have a little problem about method dispatch and "unnessary" copying. Basically what I would like to do is: `[.myclass` <- function(x, i,j, extraopt=TRUE/FALSE, drop=TRUE) { ...do stuff depending on extraopt... value <- Nextmethod("[", x, i,j, drop=TRUE) ... do more stuff depending on extraopt... } I have two general problems: (1) NextMethod() really doesn't like having "extraopt" around. (2) I can do "unclass" or "class<-" (they seems to do exactly the same thing with R_set_class()), but it makes a new copy of the object. The object in my case is very large - (about 80MB, and will be 10x higher if I can get away with it) and the copying itself accounts for 97% of the total CPU time consumed - which basically makes it about 30 times slower than it should be. In fact R_set_class says:> /* set the class to value, and return the modified object. This is > NOT a primitive assignment operator , because there is no code in R > that changes type in place. See the definition of "class<-" in > the methods package for the use of this code. */I came upon "RemoveClass()" in R/src/main/object.c which says it is __unused__ but seems to do what I would like it to do. So I tried a S4 method dispatch mechanism, but it is 3 times *slower* than unclass, and it seems to be due to the switch() statement inside getDataPart() (in R/src/library/methods/R/RClassUtils.R) which typically copies the object three times? (I think "attributes(value) <- NULL" also copies)> getDataPart <- > function (object) > { > ... > switch(dataPart,...> array = { > value <- object > attributes(value) <- NULL > attr(value, "dim") <- attr(object, "dim") > attr(value, "dimnames") <- attr(object, "dimnames") > object <- value > }, > ... > object > }The basic question is - is there a way of implementing a method which has extra arguments compared to generic? The other question concerns the "there is no code in R that changes type in place" statement - how can one avoid excessive copying in these two cases? Is it alright to invoke the "RemoveClass()" routine to do a unclass_in_place()? (I did think about doing my own unclass(), but it just seems exactly like what RemoveClass() is!). Hin-Tak Leung
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