Yes, this must be from some commit yesterday, because the build from previous
night worked. I see the same error in the nightly builds:
http://r.research.att.com/log-R-2.13-branch.leopard.i386.html
On May 19, 2011, at 8:47 AM, Kasper Daniel Hansen wrote:
> I am only reporting this because it is the current release branch and
> not devel.
>
> R-2.13 from svn revision 55957 builds fine, but fails make check.
> This happened with a fresh svn checkout 12 hours ago and it still
> happens as of now. Two days ago I could build R-2.13 and it passed
> make check on the same system, so I doubt it is a system problem. But
> just in case my system details are a fresh install of OS X Snow
> Leopard (new machine) with Xcode 4 and Simon's gfortran and a number
> of his other libraries (readline, cairo, libpng, jpeg, pixman and some
> others).
>
> Output from make check:
>
> running code in '../../R-2.13-src/tests/reg-examples1.R' ... OK
> running code in '../../R-2.13-src/tests/reg-examples2.R' ... OK
> running code in '../../R-2.13-src/tests/reg-packages.R' ...make[3]:
> *** [reg-packages.Rout] Error 1
> make[2]: *** [test-Reg] Error 2
> make[1]: *** [test-all-basics] Error 1
> make: *** [check] Error 2
>
> locating tests/reg-packages.Rout.fail I find
>
>> stopifnot(require("myTst",lib = "myLib"))
> Loading required package: myTst
>> sm <- findMethods(show, where=
as.environment("package:myTst"))
>> stopifnot(names(sm at names) == "foo")
>> unlink("myTst_*")
>>
>> ## More building & installing packages
>> ## NB: tests were added here for 2.11.0.
>> ## NB^2: do not do this in the R sources!
>> ## and this testdir is not installed.
>> pkgSrcPath <- file.path(Sys.getenv("SRCDIR"),
"Pkgs")
>> if(file_test("-d", pkgSrcPath)) {
> + ## could use file.copy(recursive = TRUE)
> + system(paste('cp -r', shQuote(pkgSrcPath),
shQuote(tempdir())))
> + pkgPath <- file.path(tempdir(), "Pkgs")
> + op <- options(warn=2) # There should be *NO* warnings here!
> + ## pkgB tests an empty R directory
> + dir.create(file.path(pkgPath, "pkgB", "R"),
recursive = TRUE,
> + showWarnings = FALSE)
> + p.lis <- c("pkgA", "pkgB",
"exS4noNS", "exNSS4")
> + for(p. in p.lis) {
> + cat("building package", p., "...\n")
> + r <- build.pkg(file.path(pkgPath, p.))
> + cat("installing package", p., "using file",
r, "...\n")
> + ## we could install the tar file ... (see build.pkg()'s
definition)
> + install.packages(r, lib = "myLib", repos=NULL, type =
"source")
> + stopifnot(require(p.,lib = "myLib",
character.only=TRUE))
> + detach(pos = match(p., sub("^package:","",
search())))
> + }
> + ## TODO: not just print, but check the "list":
> + print(installed.packages(lib.loc = "myLib", priority =
"NA"))
> + options(op)
> + unlink("myLib", recursive = TRUE)
> + unlink(file.path(pkgPath), recursive = TRUE)
> + }
> building package pkgA ...
> Error in parse_description_field(desc, "BuildKeepEmpty",
keep_empty1) :
> object 'keep_empty1' not found
> Execution halted
> Error: (converted from warning) running command
> '/Users/khansen/Source/R-2.13-build/bin/R CMD build --keep-empty-dirs
>
/var/folders/E3/E3ZBCIQ9El4LlIR92ARpyE+++TI/-Tmp-//Rtmpw9faGg/Pkgs/pkgA'
> had status 1
> Execution halted
>
> Kasper
>
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