similar to: r-2.13 fails make check

Hello, I'm trying to install R from sources on two Linux machines (both with Suse 12.2): 1. > uname -a Linux cs-wsok 3.4.6-2.10-desktop #1 SMP PREEMPT Thu Jul 26 09:36:26 UTC 2012 (641c197) x86_64 x86_64 x86_64 GNU/Linux 2. > uname -a Linux csltok.swansea.ac.uk 3.4.6-2.10-desktop #1 SMP PREEMPT Thu Jul 26 09:36:26 UTC 2012 (641c197) x86_64 x86_64 x86_64 GNU/Linux I am trying version

I am trying to build the latest version of R (3.6.2) on a CentOS system running 7.7.1908. I have been able to build previous versions of R up to and including 3.5.3 successfully. Starting with 3.6.0 the "make check" step fails with errors relating to "pdflatex" being missing. So, I installed texlive-latex (and the 100 other rpm dependencies) then tried rebuilding R.

Hi, Let me justify building R from source. While I can obtain R built for me under Ubuntu, I tend to build it from scratch as we use a NFS-shared build as well as shared R libraries for all the bioinfo staff at this company. Only one build and one set of packages to ensure uniformity across all workstations. My problem is that despite using a pretty standard build process, I am failing at the

Hello. I have successfully built R on windows scores of times, and have never come across this problem. For this build, I am using the current 4.6.3 prerelease version of Rtools, Windows7 64 bit, and R-devel_2015-09-14.tar.gz When running make check, I get the following error: running code in 'reg-packages.R' ...make[3]: *** [reg-packages.Rout] Error 1 make[2]: *** [test-Reg] Error 2

Testing for an NFS effect on the failure of 'make check': Try first on /usr/local/ 9:42 cd /usr/local/src/ 9:42 sudo mkdir R 9:43 sudo chown mdalphin:mdalphin R 9:43 cd R 9:43 gunzip -c /opt/apps/x86_64/R/Archive/R-3.2.5.tar.gz | tar xf - 9:43 cd R-3.2.5/ 9:44 ./configure --prefix=/opt/apps/x86_64/R/R-3.2.5 LIBnn=lib 9:44 make 9:57 make check

Hi, I am getting an error from one of the test files tests/reg-tests-1.R using the unstable version (r50179). (i've learned my lessons; this is a clean build.) The tail of reg-tests-1.Rout.fail is Loading required package: myTst building package pkgA ... installing package pkgA using file pkgA_1.0.tar.gz ... Error in as.octmode(mode) : invalid digits Error in install.packages(r, lib =

Hi, I have a MapReduce Java code, which I am calling from R using rJava. I have prepared the R package and tested that successfully. But when I deployed the package in a cluster and executed it, I am getting ClassNotFoundException. If I run the same job directly without integrating with R, it runs perfectly. Here is my R code: library(rJava) muMstSpark <- function(mesosMaster = NULL, input =

On 14 October 2008 at 09:39, Simon Blomberg wrote: | Hi, is anyone else getting this error? Could this be a bug?: | | > update.packages(ask=FALSE) | Error in read.dcf(pkgpath, fields = fields) : | Line starting 'unix; ...' is malformed! | | > sessionInfo() | R version 2.8.0 RC (2008-10-12 r46696) | x86_64-pc-linux-gnu Confirmed in plain R using the same package built this

On 14 October 2008 at 09:39, Simon Blomberg wrote: | Hi, is anyone else getting this error? Could this be a bug?: | | > update.packages(ask=FALSE) | Error in read.dcf(pkgpath, fields = fields) : | Line starting 'unix; ...' is malformed! | | > sessionInfo() | R version 2.8.0 RC (2008-10-12 r46696) | x86_64-pc-linux-gnu Confirmed in plain R using the same package built this

Hi, not sure this is a bug or just an unavoidable undesirable side-effect -- or just me that does not do the right thing. Consider the code and output below. It creates 2 packages: * pkgA * pkgB that creates a method for a generic defined in pkgA Changes in a method for the generic in pkgA (after re-installing pkgA) are not reflected in pkgB, unless pkgB is re-installed against the new

Hi. contrary to other environments, the attributes of a *package* environment are dropped (from the new environment) when attach():ing it to the search() path. This might or might not be surprising, but have some side effects if rearranging/attaching package environments. # Example - Regular environments env <- new.env() attr(env, "foo") <- "bar" print(env) ##

I was wondering: are the downstream dependencies of a package rebuilt when a package is updated on CRAN? (I'm referring to the binary packages, of course.) The reason I ask is because there are cases where this can cause problems. Suppose that when pkgB is built, it calls pkgA::makeClosure(), which returns a closure that refers to a function in pkgA. Suppose this code is in pkgA 1.0:

Hi, SETUP: Consider three packages PkgA, PkgB and PkgC. PkgA defines a generic function foo() and exports it; export(foo) PkgB imports PkgA::foo() and re-exports it; importFrom(PkgA, foo) export(foo) PkgC imports everything from PkgA and PkgB: imports(PkgA, PkgB) PROBLEM: Loading or attaching the namespace of PkgC will generate a warning: replacing previous import by

Hi, just a little wish : Could we have one (or maybe more) standardized optional tag(s) for package DESCRIPTION files to cover svn revision info? This would be very useful for bug reporting... I know that any developer is already free to append corresponding lines to DESCRIPTION files to do something of this sort --- e.g. lines like LastChangedDate: {$LastChangedDate: 2009-03-31 $}

Dear R users, I have just upgraded R v1.5.0 to v1.6.1 for Windows but have trouble loading my library of R only functions (no C calls). After examining the "library" script this difference was found: (v1.5.0) which.lib.loc <- dirname(pkgpath) descfile <- system.file("DESCRIPTION", package = package, lib.loc = which.lib.loc) if

Dear R-core devs, I hope this email finds you well. Please see the proposed patch to R-devel below: Scenario: When loading a package using `library`, a package may not be found if the cases are not matching: ``` > library(ORG.Hs.eg.db) Error in library(ORG.Hs.eg.db) : there is no package called 'ORG.Hs.eg.db' ``` Suggested Patch: Returns a message matching what

Hi, is anyone else getting this error? Could this be a bug?: > update.packages(ask=FALSE) Error in read.dcf(pkgpath, fields = fields) : Line starting 'unix; ...' is malformed! > sessionInfo() R version 2.8.0 RC (2008-10-12 r46696) x86_64-pc-linux-gnu locale:

Dear list, It seems that a package (pkgB) using another package (pkgA) with S4 generics formed by taking existing functions (for example 'plot') must not import the existing functions ('plot') in its namespace to avoid the warning "replacing previous import: plot". Suppose we use the simple 'import' directive in the name space of pkgB. pkgA and pkgB files would

Hi, This strange warning happen sometimes when running 'R CMD check': * checking whether the package can be loaded with stated dependencies ... WARNING Error : .onLoad failed in loadNamespace() for ?pkgB?, details: call: length(new("A")) error: could not find function "loadMethod" Error: package/namespace load failed for ?pkgB? Execution halted

In > R.version.string [1] "R Under development (unstable) (2011-12-15 r57901)" section 1.6.6 of 'Writing R Extensions' says Note that exporting methods on a generic in the namespace will also export the generic, and exporting a generic in the namespace will also export its methods. and Note that importMethodsFrom will also import any generics defined in