Hola! I had my hard disk and cpu fried, so had to reinstall debian from scratch, and now I have problems compiling R R-2.14.0. My system is wheezy with Xfce4 desktop. (-amd-64) ./configure make runs without problems, but make test dose not! Here is some of the output from make test: kjetil at kjetil:~/R/R-2.14.0$ make check make[1]: Entering directory `/home/kjetil/R/R-2.14.0/tests' make[2]: Entering directory `/home/kjetil/R/R-2.14.0/tests' make[3]: Entering directory `/home/kjetil/R/R-2.14.0/tests/Examples' initializing class and method definitions ...done Testing examples for package ?base? comparing ?base-Ex.Rout? to ?base-Ex.Rout.prev? ... 1401c1401 < "Linux" "3.0.0-1-amd64" ---> "Linux" "2.6.32-5-amd64"1403c1403 < "#1 SMP Sat Aug 27 16:21:11 UTC 2011" "kjetil" ---> "#1 SMP Thu Nov 3 03:41:26 UTC 2011" "kjetil"5667c5667 < 67 ---> 54Testing examples for package ?tools? comparing ?tools-Ex.Rout? to ?tools-Ex.Rout.save? ... files differ in number of lines: 1d0 < initializing class and method definitions ...done Testing examples for package ?utils? comparing ?utils-Ex.Rout? to ?utils-Ex.Rout.prev? ... OK Testing examples for package ?grDevices? comparing ?grDevices-Ex.Rout? to ?grDevices-Ex.Rout.save? ... files differ in number of lines: 1d0 < initializing class and method definitions ...done Testing examples for package ?graphics? comparing ?graphics-Ex.Rout? to ?graphics-Ex.Rout.save? ... files differ in number of lines: 1d0 < initializing class and method definitions ...done Testing examples for package ?stats? comparing ?stats-Ex.Rout? to ?stats-Ex.Rout.save? ... files differ in number of lines: 1d0 < initializing class and method definitions ...done Testing examples for package ?datasets? comparing ?datasets-Ex.Rout? to ?datasets-Ex.Rout.save? ... files differ in number of lines: 1d0 ------------------------------------------------------------------------------------------------------------------- -- < initializing class and method definitions ...done Testing examples for package ?stats4? comparing ?stats4-Ex.Rout? to ?stats4-Ex.Rout.save? ... files differ in number of lines: 1d0 ----------------------------------------------------------------------------------------------- (for many packages the output is like above) make[3]: Entering directory `/home/kjetil/R/R-2.14.0/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...1d0 < initializing class and method definitions ...done make[3]: *** [eval-etc.Rout] Error 1 make[3]: Leaving directory `/home/kjetil/R/R-2.14.0/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/home/kjetil/R/R-2.14.0/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving directory `/home/kjetil/R/R-2.14.0/tests' make: *** [check] Error 2 kjetil at kjetil:~/R/R-2.14.0$ Kjetil "If you want a picture of the future - imagine a boot stamping on the human face - forever." George Orwell (1984)
On Friday 18 November 2011 20:34:59 Kjetil brinchmann Halvorsen wrote:> Hola! > > I had my hard disk and cpu fried, so had to reinstall debian from > scratch, and now I have problems compiling R > R-2.14.0. My system is wheezy with Xfce4 desktop. (-amd-64)Ola Kjetil, you may want to consider installing the latest R from unstable by apt pinning. The respective section from the Debian README on CRAN: "DEBIAN TESTING Before R 2.12.2, when squeeze was not released yet, I proposed apt-pinning for installing up-to-date R packages from unstable (sid) on squeeze by creating a file /etc/apt/preferences containing Package: * Pin: release a=testing Pin-Priority: 650 Package: * Pin: release a=unstable Pin-Priority: 600 and adding a line for unstable in /etc/apt/sources.list. As the new testing distribution with codename wheezy is not frozen, you can remove or uncomment these entries, except if you want to have the latest R version on wheezy before it migrates from unstable to testing." Kind regards, Johannes> > ./configure > make > > runs without problems, but make test dose not! > > Here is some of the output from make test: > > > kjetil at kjetil:~/R/R-2.14.0$ make check > make[1]: Entering directory `/home/kjetil/R/R-2.14.0/tests' > make[2]: Entering directory `/home/kjetil/R/R-2.14.0/tests' > make[3]: Entering directory `/home/kjetil/R/R-2.14.0/tests/Examples' > initializing class and method definitions ...done > Testing examples for package ?base? > comparing ?base-Ex.Rout? to ?base-Ex.Rout.prev? ... > 1401c1401 > < "Linux" > "3.0.0-1-amd64" --- > > > "Linux" "2.6.32-5-amd64" > > 1403c1403 > < "#1 SMP Sat Aug 27 16:21:11 UTC 2011" > "kjetil" --- > > > "#1 SMP Thu Nov 3 03:41:26 UTC 2011" "kjetil" > > 5667c5667 > < 67 > --- > > > 54 > > Testing examples for package ?tools? > comparing ?tools-Ex.Rout? to ?tools-Ex.Rout.save? ... > files differ in number of lines: > 1d0 > < initializing class and method definitions ...done > Testing examples for package ?utils? > comparing ?utils-Ex.Rout? to ?utils-Ex.Rout.prev? ... OK > Testing examples for package ?grDevices? > comparing ?grDevices-Ex.Rout? to ?grDevices-Ex.Rout.save? ... > files differ in number of lines: > 1d0 > < initializing class and method definitions ...done > Testing examples for package ?graphics? > comparing ?graphics-Ex.Rout? to ?graphics-Ex.Rout.save? ... > files differ in number of lines: > 1d0 > < initializing class and method definitions ...done > Testing examples for package ?stats? > comparing ?stats-Ex.Rout? to ?stats-Ex.Rout.save? ... > files differ in number of lines: > 1d0 > < initializing class and method definitions ...done > Testing examples for package ?datasets? > comparing ?datasets-Ex.Rout? to ?datasets-Ex.Rout.save? ... > files differ in number of lines: > 1d0 > > --------------------------------------------------------------------------- > ----------------------------------------