similar to: Problem with R using pgi compiler on x86_64

64-bit R-2.12.0 was installed on Sun SPARC Solaris 10. Compiler used is solstudio12.2. Attached is the configure script. I then tried to install a recommended package called Matrix. The compilation failed with the following messages, ....... CC -library=stlport4 -G -L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o

Hi, I have been trying to install the Matrix package on R running in Linux (Fedora). But, I get the following error message (at the bottom). I am logged in as the root user. Any help would be appreciated! Thanks! -Hyunseung Kang * Installing *source* package 'Matrix' ... Using GNU make for building the package ** libs ** arch - gcc -m32 -std=gnu99 -I/usr/include/R

Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd

Hi all, I'm unable to compile R under an HPC system (which like many HPC systems doesn't always have the latest and greatest software). The version of GCC is 4.1.2 under CentOS 5.7. Running ./configure gives the following output: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /home/tbarik C compiler: gcc

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

I'm using package Matrix, which I have installed on several flavours of linux system. But on an important solaris install, I can't make it work. Initially, I thought the problem was using 'make' instead of 'gmake', but I masked around that, and still get errors. Those new errors seem to be related to 'cc' wanting some optional extras that I don't have

Dear listers, I have update to rtools43 and, using R 4.2.3 I have been surprised not to be able to compile packages needing compilation when updating. Looks like the path given in gcc? -I"C:/PROGRA~1/R/R-42~1.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"???? -O2 -Wall? -std=gnu99 -mfpmath=sse

Dear developers, today I tried to build and install R-devel_2009-01-10 on FreeBSD 8.0-CURRENT (i386) for testing purposes. All went well until compiling the now recommended (integrated) Matrix package. At this point the following break occured: ------------------------------------------------ begin installing recommended package Matrix * Installing *source* package 'Matrix' ... **

All: Attached is the output file from building R 2.10.0 on RedHat Linux. I have never previously experienced any problems when building R from source with new releases. But, now I get a compile error with the Matrix package: CHOLMOD/Include/cholmod.h:87:22: error: UFconfig.h: No such file or directory make[3]: *** [CHMfactor.o] Error 1 make[3]: Leaving directory

Hi R usrs, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

I am trying to compile R-devel (R-devel_2006-05-17.tar.gz) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group compiler 6.0. (I have not yet successful compiled R on this configuration, so I don't know if this is a new problem.) I get an error pgcc -L/usr/local/pgi/linux86-64/6.0/libso -L/usr/lib64 -o dftables dftables.o ../dftables chartables.h

Hi, I followed this message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028942.html, to compile ATLAS with gcc and g77 on AMD Opteron. I then followed the instructions on this message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to convert static libraries to dynamic libraries. However, when I tried to configure R-devel, I got the following error

The bulk is on my forums - the final post for today is: Results to date: A. It looks like I am going to need a newer compiler for C - xlc/xlC V11 apparently does not understand this code: "/data/prj/cran/R-3.2.3/src/main/memory.c", line 2149.31: 1506-046 (S) Syntax error. I will have to check if R-devel has different code before asking for assistence. +2139 #ifdef

Hi All, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

> From: Prof Brian Ripley [mailto:ripley@stats.ox.ac.uk] > > On Fri, 2 Apr 2004, Liaw, Andy wrote: > > > Dear R-devel, > > > > I'm trying to compile R-1.9.0beta (2004-03-31) with the PGI > compilers > > (15-day free evaluation: after the 15 days the binaries > will stop working). > > I'm running into some problems, that I hope some can

Hi, Has anyone had any luck in using portland group compiler to build R(-devel) with AMD's pgi compiled ACML library? I've downloaded the packages and set LD_LIBRARY_PATH, and run configuration script as follow: % ./configure --prefix=/usr/local/R.pgcc --with-blas='-lacml' However, it failed to pick up double complex BLAS, checking for sgemm_ in -lacml... yes checking

Hi, I have additional comments on building R with PGI compiler. If one wants to use external BLAS library, then pgf90 instead of pgf77 should be used, and BLAS_LIBS flags should be set. e.g. F77 = $PG_HOME/bin/pgf90 BLAS_LIBS='-L/opt/acml2.7.0/pgi64/ -lacml' # for ACML library BLAS_LIBS='-L/usr/lib64 -lg2c -lblas' # for generic BLAS library that comes

Dear R-devel, I'm trying to compile R-1.9.0beta (2004-03-31) with the PGI compilers (15-day free evaluation: after the 15 days the binaries will stop working). I'm running into some problems, that I hope some can offer pointers. 1. After configure, the FLIBS include /usr/local/lib' --- note the extra '. I had to manually delete it in a couple of places. In a previous thread on

On Jun 15, 2012, at 9:16 AM, Douglas Gregor wrote: > On Jun 14, 2012, at 3:54 PM, Walter Landry wrote: >> Hello Everyone, >> >> I thought you might be interested in some C++ expression template >> benchmarks I have done. >> >> http://www.wlandry.net/Projects/FTensor#Benchmarks >> >> Clang's performance was mixed. It optimized the

Hello I would like to build R from source and use the PGI compiler, rather than the GCC compiler. I saw the instructions for the Intel compiler in the R Installation Manual, but I didn't see the PGI. I tried a few times without instructions, but without success. Any suggestions would be most welcome. Also, I hope this is the right group for the question. Sincerely, Erin -- Erin