similar to: Problem with RMA using limma, oligo and pdInfoBuilder packages

Displaying 20 results from an estimated 140 matches similar to: "Problem with RMA using limma, oligo and pdInfoBuilder packages"

2012 Oct 19
4
Creating a new by variable in a dataframe
Hello, I have a dataframe w/ 3 variables of interest: transaction,date(tdate) & time(event_tim). How could I create a 4th variable (last_trans) that would flag the last transaction of the day for each day? In SAS I use: proc sort data=all6; by tdate event_tim; run; /*Create last transaction flag per day*/ data all6; set all6; by tdate event_tim; last_trans=last.tdate; Thanks
2013 Jun 18
1
install a package made using bioconductor package pdInfoBuilder
Dear maintainer, I used bioconductor package, pdInfoBuilder, to make a microarray platform annotation package. I named this package, pd.pdinfo.gpl11164.ndf.txt. This "self-made package" is to be used with oligo package. Prior to using oligo package, I need to install the annotation package, pd.pdinfo.gpl11164.ndf.txt, and cannot just copy it to the library tree. I tried using the
2009 Dec 15
2
Reconstruct a dataset
Dear all, I have a dataset that looks like this: inividual var1 var2 ? 1 1 1 ? 2 1 2 ? 3 2 1 ? 4 2 2 ? ? ? ? ? I will random sample 2 individuals from this dataset based on a set of random numbers, e.g., rn1 <- c(0, 0, 1, 1), rn2 <- c(0, 0, 2, 0), rn3 <- c(1, 0, 0, 1), rn4 <-
2009 Mar 17
3
PXE boot hangs while transferring vmlinuz or initrd.img
Hi, I have a user that is experiencing problems pxe booting several identical servers. pxelinux.0 is from syslinux 3.63 and the TFTP server is 0.42 running on CentOS 5.2. After loading pxelinux.0, the client will then start transferring vmlinuz and initrd.img via tftp. More than half the time, the transfer will get stuck and then eventually print a timeout message. I ran tcpdump and I can see
2005 Aug 20
1
feature-wish: "--ignore-unrelated-errors" option
Hi. I looked high and low for the following feature of rsync but it does not seem to be available, even though it would be really useful: --ignore-unrelated-errors. The semantics should be the following: when an I/O error is encountered while reading a directory foo/ (as far as I understand, rsync only takes into account errors on directories, not on individual files), no deletion should be
2008 Jun 19
5
No sub-menus in complex.c32
>> Hi, >> >> I have created my own custom menu using menu/complex.c as an example. >> This was way back in the syslinux 2.x days, so the menu system had not >> yet been converted to COM32. With a few minor changes, I now have >> this compiling and running under v3.63. The problem is that only the >> top level menu works. Trying to access any sub-menu
2003 Dec 29
2
Update
How do you update R on Windows and how do you install your own package with windows interface ? regards, Ghislaine GUIGON Biostatisticienne Plate-forme 2 Puces a ADN INSTITUT PASTEUR 25-28 rue du Dr ROUX 75724 Paris cedex 15 FRANCE tel: (33) (0)1 40 61 86 51 fax: (33) (0)1 45 68 84 06
2019 Apr 17
3
[Bug 13901] New: Empty quotes adds cwd to SRC directories
https://bugzilla.samba.org/show_bug.cgi?id=13901 Bug ID: 13901 Summary: Empty quotes adds cwd to SRC directories Product: rsync Version: 3.1.3 Hardware: x64 OS: Linux Status: NEW Severity: normal Priority: P5 Component: core Assignee: wayne at opencoder.net Reporter:
2008 Jun 19
1
No sub-menus in complex.c32q
Hi, I have created my own custom menu using menu/complex.c as an example. This was way back in the syslinux 2.x days, so the menu system had not yet been converted to COM32. With a few minor changes, I now have this compiling and running under v3.63. The problem is that only the top level menu works. Trying to access any sub-menu results in the program exiting back to the boot prompt. I
2009 Dec 28
2
[BioC] make.cdf.package: Error: cannot allocate vector of size 1 Kb
My machine has 8GB memory. I had quit all other programs that might take a lot of memory when I try the script (before I post the first message in this thread). The cdf file is of only 741 MB. It is strange to me to see the error. On Mon, Dec 28, 2009 at 2:38 AM, Wolfgang Huber <whuber at embl.de> wrote: > Dear Peng Yu > > how big is the RAM of your computer? You could try with
2006 Aug 13
5
DO NOT REPLY [Bug 4016] New: literal IPv6 addresses not supported in ssh protocol
https://bugzilla.samba.org/show_bug.cgi?id=4016 Summary: literal IPv6 addresses not supported in ssh protocol Product: rsync Version: 2.6.9 Platform: All OS/Version: Linux Status: NEW Severity: normal Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: david.madore@ens.fr
2009 Feb 12
5
Extending each element in a list, or rbind()-ing arrays of different length without recycling
Hi, I'm trying to take a matrix such as [,1] [,2] [,3] [,4] [,5] [1,] 2 7 2 7 9 [2,] 10 10 6 8 6 [3,] 1 9 7 2 0 and generate a new matrix which contains only the unique values in each row: [,1] [,2] [,3] [,4] [,5] [1,] 2 7 9 NA NA [2,] 10 6 8 NA NA [3,] 1 9 7 2 0 My problem is that I can use
2011 Dec 12
0
Rsolnp package: warning messages
Dear, I am using the solnp command (package Rsolnp) for a problem with equality and inequality constraints. I am not getting convergence for my problem but apart that I get 1 warning per iteration saying: ?In cbind(temp, funv) : number of rows of result is not a multiple of vector length (arg 1)?. I checked for equality and inequality functions and they seem fine to me. Where this
2019 Apr 17
0
[Bug 13901] New: Empty quotes adds cwd to SRC directories
I brought this up on the list years ago and was told it's a feature, not a bug. Even if some other GNU or Linux commands have this "feature", it still violates the principle of least surprise. It's also pretty hard to discover because a null argument is literally invisible. Joe On 4/17/19 9:54 AM, just subscribed for rsync-qa from bugzilla via rsync wrote: >
2014 Dec 17
1
Differing behaviour on consecutive runs
Hi all. I have a strange issue with sync'ing from a USB-attached ext4 file system on one machine, to a USB-attached ext3 file system on another. The sync works fine (a few thousand files). If I run it again straight away, or a few minutes later, rsync reports no action required. But if I wait for a few hours and run it again it copies all the files again. I'm trying to determine
2007 Aug 24
1
Mistake in FAQ?
Hi, I think there's a mistake in the french version of the FAQ at http://vorbis.com/faq/ ----8<------8<------8<------8<-- Est-il possible de porter l'encodeur/d?codeur Vorbis pour une plateforme sans gestion de virgule flottante ? Cela a d?j? ?t? fait pour le d?codeur. Tremor est une impl?mentation ? virgule fixe du d?codeur Vorbis qui peut ?tre utilis?e sur les
2009 Mar 17
1
Need to build package for Affy HT HG-U133+ PM arrays
I would like to build a package for the HT HG-U133+ PM arrays from affy, but I can't find any good documentation on how to go about it. Naively using makecdfenv's make.cdf.package() causes R to seg-fault. I'm unfamiliar with the CDF format as such, but I'm guessing that it's changed somewhat because the PM arrays no longer have P/A and mismatches. I'm looking to build
2004 Jan 05
1
install on windows
I'm trying to install packages on windows XP and I have trouble with command Rcmd build (R version 1.8.1) : In the Windows console for package maanova for example, answer is : C:\Documents and Settings\dillies\Mes documents\ghis\packages>Rcmd build maanova * checking for file 'maanova/DESCRIPTION' ... OK * preparing 'maanova': * cleaning src *
2016 Dec 16
0
Job Ad. CEA Grenoble, France. Research Engineer Position
research engineer, 3 years, CEA, Grenoble, France Computer Science/Electrical Engineering Contact: Damien Couroussé (damien.courousse at cea.fr) A 3-year research engineer position is available at CEA Grenoble. The topic is related to cybersecurity in mobile applications. Further details and requirements are as follows: We are inviting application for a research engineer position at CEA
2014 Jan 12
14
[Bug 10372] New: rsync 3.10 error in protocol data stream while rsync 3.0.9 runs through
https://bugzilla.samba.org/show_bug.cgi?id=10372 Summary: rsync 3.10 error in protocol data stream while rsync 3.0.9 runs through Product: rsync Version: 3.1.0 Platform: x64 OS/Version: Linux Status: NEW Severity: normal Priority: P5 Component: core AssignedTo: wayned at