similar to: R course in Scotland

Hi, I am looking for a R package to draw 3d plot. But not in a static way like scatterplot3d or stuff like that. I would like to make rotate the plot, to zoom/unzoom etc..., actually to render the graph 'dynamic'... (for the biologist and bioinformatician, a R package which permitts to reproduce what pdb viewer does). Does a Way exist to do something like that in R ? Thanks,

Hi there, I am a bioinformatician working in DFCI. I am new to R. Yesterday I installed the R-1.7.1 to my Linux (since I am not able to find R-1.8 on the webpage). But I have some package installation problems ... 1. install.packages2() function isn't available. If I type at R prompt: >install.packages2("Biobase") Error: couldn't find function

Hello R-Members I have to install several R packages on a Unix server which doesn't have internet connection. I downloaded some packages manually and I installed it from source using the command R CMD INSTALL and it's work but in some cases I can't install the package because of the dependencies. So I download all the R packages into a directory for example /home/joel/RPacks.

I am trying to write an efficient function that will do the following: Given an nxm matrix, 10 rows (observations) by 10 columns (samples) for each row, test of all values in the row are greater than a value k If all values are greater than k, then set all values to NA (or something), Return an nxm matrix with the modified rows. If I do this with a matrix of 20,000 rows, I will be waiting until

Hello I am am new to R and any help with the following would be appreciated: I have a list (example attached) and I would like to create a new list which is a filtered version of this list. I.e I would like a list that only contains elements with this value: Chr 10 : 21853562 - 21855482 Any pointers/tips would be great. Thanks! Nikol -- Bioinformatician/Computer Associate Cambridge Institute

Hi Guys I am Abhishek, primarily a bioinformatician. I have recently started using a lot of R thanks to some excellent packages available. Lately I have felt the need to batch process few of the R scripts I have been working with and strangely enough I am not able to find a good resource on how to best do this. I did find few old threads on the archives but none convinced me much. So here I am

*The Jenner Institute is seeking to appoint an outstanding Bioinformatician to run a Transcriptomics Core Facility at the Jenner Institute and to identify, develop and integrate bioinformatics resources into the research programmes of the institute. You will be based at the Jenner Institute in the Old Road Campus Research Building, Headington, Oxford and working in conjunction with Gilean

Hi, Using Ape, I have constructed an object of class "phylo", using the method 'nj' (lets call the object 'tree_ja'). I also have a given subset of 'tree_ja' in a vector (lets call the vector 'subspecies'). What I want to do, is construct a nj tree - plot(tree_ja) - but have the species in vector 'subspecies' shown as red at the tips of the

Dear all. I need to draw a scatter plot of 23 chromosome copy numbers (y axes) against chromosome and physical location within each chromosome in one plot. The data matrix looks as below: chr location copy_num 1 118345 1.320118 1 3776202 1.133879 1 4798845 0.989997 1 5350951 1.100967 . more data here . . 2 118345 2.459119 2 157739 1.915919 2 1530065 1.924372 2

Dear All I would need to perform a MANOVA with both fixed (group, sex, group*sex) and random (brood) effects. I wonder if this is at all possible and if R does that. At the moment, I only know that I can run a classic MANOVA with R. Thank you David ______________________________________________ David Costantini, PhD http://www.davidcostantini.it NERC Postdoctoral research associate

Yes, keep the $(lsb-release -cs) there. This allows you to change the version of the OS without having to change anything else (for instance we are migrating all of our docker to 24.04 LTS right now, so we only have to modify the FROM entry and all of our Dockerfile will still work). From: Gerber, Lauren J <lauren.gerber at helsinki.fi> Date: Thursday, July 11, 2024 at 2:21?AM To:

I am running a Samba server on Debian testing. Each day, I run an automatic update via apt. Up until recently, the server was working fine; I am assuming that the update has upgraded to a non-working version. I can log onto the server using smbclient and browse the files, but when I issue a "get" command I get the "Short read" error message. If I use smbmount, things are

On Sun, Oct 11, 2015 at 3:15 PM, Michael Glasgow <glasgow at beer.net> wrote: > I'm not sure what the decaying i/o issue looks like. It's a bit > slow loading the initrd, but I think the efi drivers are just slow > in general. Just in case, I went ahead and did a capture on the > g18 patch loading OL 7.1, which you can grab from here: > >

On Oct 11, 2015 1:26 AM, "Michael Glasgow" <glasgow at beer.net> wrote: > > Gene Cumm wrote: > > >> My test x86-64 binaries: > > >> > > >> https://sites.google.com/site/genecsyslinux/sl604p0g17-x64.tgz?attredirects=0&d=1 > > > > On Fri, Oct 2, 2015 at 4:46 PM, Derrick M <derrick.martinez at gmail.com> wrote: > >

the following occurred inadvertently and brought R-1.1.0 down rep(1:3, c(4,2,-6)) Segmentation Fault (core dumped) platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 1 minor 1.0 year 2000 month June day 15 language R

Hi, I propose to create an entry in Tips and Tricks - 5. Admin tricks and shell one-liners describing how to disable the user list in the GDM graphical login. I would draw on the info posted in this blog entry http://blog.toracat.org/2011/01/gnome-login-shows-all-valid-user-accounts-disable-it/ CentOS wiki user: BrianSmith Dr. Brian O. Smith --------------------------- Brian Smith at glasgow

Hi Marco, Thank you for the follow up email. In the line below, do I replace $(lsb-release -cs) with jammy (Ubuntu 22.04) or leave it alone: Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/? It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects. Br, Lauren -- Lauren J. Gerber

I am currently using Virtual PC 2007 to install/configure CentOS 4.5. I've got the O/S installed ok. However since running a yum update, I can no longer successfully complete an init 5 boot. Virtual PC gives an internal error 13 message. If I boot to init 3, I can reconfigure the /etc/X11/xorg.conf file and run 'startx' manually without any problems. If I then shutdown the Virtual

Hi All, The Glasgow Haskell compiler has recently become an external user of LLVM. You can read about it here: http://blog.llvm.org/2010/05/glasgow-haskell-compiler-and-llvm.html If you have any comments, questions or perhaps even advice on solving some of the issues that need to be fixed in the backend going forward then please reply to this email. Cheers, David

Hi I have a long data set on which I want to do Bland-Altman style plots for each rhythm type Using ggplot2, when I use geom_hline with facet_grid I get an extra set of empty panels. I can't get it to do it with the "Diamonds" data supplied with the package so here is a (much abbreviated) example: > lvexs cvd_basestudy ecd_rhythm fixed_time variable_time 1 CBP05J02