similar to: Help in HMM commands

I am comfortable with windows based R. But recently I had shifted to LINUX(Red Hat Linux Enterprise Guide 4) 1) I want to load J K Lindsey's repeated library in R. How to install the packge? 2) How to create the shared library if I ve the fortran codes(I haven't done creation of shared library in windows also). I had run the command Rcmd in bin directory but an error message "bash:

Hi All, I want to upload J K Lindsey's "repeated" in a LINUX OS.. I had tried the command.. [root@localhost Desktop] # R CMD INSTALL repeated.gz " WARNING: invalid package 'repeated' " *Installing to library '/usr/local/lib/R/library' ERROR: No packages

I have a time series (count) data.. Can you tell me the command for the parametric bootstrapping. My parameters are var to mean ratio and mean run length... -- regina.verghis@gmail.com Regina M.Verghis, [[alternative HTML version deleted]]

Just thought I'd post a simple workaround for Windows ACL's and file attributes for rsync. Using some basic scripting will allow ACL information to be stored for future use on files transferred using rsync. Most will probably find the information worthless but thought I'd post it anyway. - To get ACL information, use the icacls program provided as part of Server 2003 SP1

Hi, I got command to execute R code from Mark. but it was showing error.. Error in library(hopach) : there is no package called 'hopach' Does it mean this library hopach is not installed. But I have installed complete Bioconductor package. I am confused. can you help me in this thanks Regards, -- Prateek Singh Final year Bioinformatics(BTech) Vellore Institute Of Technology

Hi, I have 'R' code in file. saved it as exmaple.r here is the code....... library("hopach") GSE <- read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE) gene.dist <- distancematrix(t(GSE),d="euclid") gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med") labelstosil(gene.hobj$cluster$label,gene.dist) I dont

Hi there, I am working on clustering genomic data. I am using HOPACH method for clustering. I have a query here. How can i get SS (split silhouette) value for individual clusters. What I am getting as MSS value, is Mean of all SS value of individual cluster. Hence I am getting single value for a gene set. But I would be very helpful for me if I get silhouette value for individual clusters.

Thanks (again) I?aki. There was a typo in my reply above. I should have said: I *can't* answer the question re USE_LOCKING=1. Those other suggestions are really helpful too; I really didn't understand what the difference was (I'm still not clear what the differences are between say openblas-openmp and openblas-openmp64), but I did get R to pass mgcv's thread safe test with both

Thanks I?aki, that is exactly what i was looking for, esp the last option which I have now configured as an alias for easy remembering. I can answer the question re USE_LOCKING=1. I think that using both those options is required to get thread-safety even if openblas was compiled for single thread use. I don't know to what extent Simon has engaged with upstream on this etc. All I know is

Dear R-users, I have longitudinal data and would like to fit a model where both the variance-covariance matrix of the random effects and the residual variance are conditional on a (binary) grouping variable. I guess the model would have the following form (in hierarchical notation) Yi|bi,k ~ N(XiB+Zibi, sigmak*Ident) bi|k ~ N(0, Dk) K~Bernoulli(p) I can obtain different sigmas (sigma0 and

Dear list, What is the recommended incantation on Fedora 32 to swap out the openblas BLAS that the packaged (rpm) version of R-core installs for ATLAS? I'm running into some problems with some big models I want to fit using the mgcv package, and openblas is apparently not thread safe and is causing problems. I have the following installed: $ dnf list installed | grep ^R R-core.x86_64

Hello, I'm running Samba 3.0.9 on SuSE Enterprise Linux Server 9.0. Samba is acting as a PDC for Win2K/XP systems. I upgraded this system from samba 2.x running on Mandrake 10. I brought over the old smbpasswd file. Domain logons work just fine. Today I changed a users password with smbpasswd and now they can't logon to any domain member workstation. I also created a new

Hi, I'm involved in a bioinformatics project at my university, and we're doing a comparison paper between some methods of classification of nc-RNA. I've been encharged of ploting the ROC curves' graphs. But I'm new on working with R and I'm having some difficulty with the prediction-class. I don't get where the values of ROCR.simple$predictions, for example, came from

Hi, -We are running Samba Version 2.2.7-4 on AIX 5.3 and i need to upgrade this to atleast 3.0.5 Version or even latest. -While i checked in site "http://samba.org/samba/download" for suitable Version i can find one as ' samba-3.0.5.tar.gz' but while downloading and install using "smitty install" cant see any files to install. -maybe i was looking in the

Full_Name: Kristian Eric Markon Version: 1.6 OS: Win 98 Submission from: (NULL) (24.26.167.90) I noticed sort of an odd bug when I was printing out figures to png files. It's a bit difficult to explain how to reproduce exactly, because it depends on a lot of data specific to my situation. Basically, if I plot the figure to the screen, it looks exactly as it should. If I plot the figure to

Full_Name: Kristian Eric Markon Version: 1.6 OS: Win 98 Submission from: (NULL) (24.26.167.90) I noticed sort of an odd bug when I was printing out figures to png files. It's a bit difficult to explain how to reproduce exactly, because it depends on a lot of data specific to my situation. Basically, if I plot the figure to the screen, it looks exactly as it should. If I plot the figure to

Full_Name: Kristian Markon Version: 1.9.1 OS: Windows, Linux Submission from: (NULL) (66.41.56.226) I'm just emailing to say great work, and to put in a suggestion for something I've wanted to see for a long time: multiline comments or some equivalent. It's not something that makes or breaks my experience with R, but something I've often wanted, and something I think prevents me

Hey Team.. We notice that repeated file writes to the Samba server slows down under moderate loading. Has anyone else had this fall off in performance and if so, what did you do to correct it? regards.. Sean Angley, P.Eng. sangley@ca.ibm.com Host Server Support ISM Canada IBM Global Services One Research Drive Regina, CANADA S4S 7H1 PHONE: (306) 790-5199

Hello everyone, I am currently using the mvpart package and would like to change the color scheme it uses, and was hoping someone could help me out. All of the papers I have found have used a grayscale but I can't seem to figure out how they did that! Currently, mvpart plots barplots in a repeating sequence of 3 shades of blue. So if you have 6 response variables the same shade of blue is used

I'd just like to report a possible R bug--or rather, confirm an existing one (bug #751). I have had some difficulty using the polyroot() function. For example, in Win 98, R 1.1.1, > polyroot(c(2,1,1)) correctly (per the help index) gives the roots of 1 + (1*x) + (2*x^2) as [1] -0.5+1.322876i -0.5-1.322876i However, > polyroot(c(-100,0,1)) gives the roots of [1] 10+0i -10+0i