similar to: subscript out of bounds

Dear All It is very kind of you to guide me. When I want to run this line, I see this error stat.obs <- apply(GS, 2, function(z) Hott2(t(DATA[which(z==1),]), cl)) Error in colSums(w * x) : 'x' must be an array of at least two dimensions cl <- as.factor(y) GS: a matrix with 0 or 1 GS: gene sets -> a data matrix with rows=genes, columns= gene sets, GS[i,j]=1 if gene i in

Dear ALL I want to load "HTSanalyzeR", It 's necessary to load "igraph" package. This time I see this error: library(igraph) library(HTSanalyzeR) Loading required package: GSEABase Loading required package: Biobase Error: package 'Biobase' is not installed for 'arch=i386' > I 'll be glade if you help me [[alternative HTML version deleted]]

I have a user with C5.4 64-bit, fully updated, performed a yum install glade, it claimed to have installed everything, but we cannot get it to run. Neither whereis nor locate revleal an executable. We obtained the latest glade source from the project's web site, attempted to configure it, until it complained of needed dependencies, namely gtk+ (newer than what was on the system). So I got

Hi, I'm running debian - upgraded fully to potato at the start of the freeze and added latest libgnome-dev before configuring. I tried compiling with gnome support with /usr/local/R/R-0.99.0/configure --with-gnome and got the following output: checking for gnome-config... /usr/bin/gnome-config checking if /usr/bin/gnome-config works... yes checking for orbit-config...

Hi I am running a simulation that involves a loop calling three 2 functions that I have written. Everything works fine when the inside of the loop is performed up to 1000 times (for (i in 1:750)). However, I sometimes get : ''Error: subscript out of bounds'' if I try to increase the loop 'size' to 1000. I am thinking it has to to with memory but I am not sure. I have

RF trains fine with X, but fails on prediction > library(randomForest) > chirps <- c(20,16.0,19.8,18.4,17.1,15.5,14.7,17.1,15.4,16.2,15,17.2,16,17,14.1) > temp <- c(88.6,71.6,93.3,84.3,80.6,75.2,69.7,82,69.4,83.3,78.6,82.6,80.6,83.5,76 .3) > X <- cbind(1,chirps) > rf <- randomForest(X, temp) > yp <- predict(rf, X) Error in predict.randomForest(rf, X) : subscript

Hi all, I am a new user for R. I faced a questions about subscript out of bounds. Although I checked some other helps before I sent this email, I still don't know how to deal with this problems. I want to use "domain" function to run species distribution model in R. I used "sp.occ.do<-domain(env.pre, pred_train, factors=c('continent')) &

Hi, Could you please tell me how I correct the following error message? “Error in object$tables[[v]] : subscript out of bounds” This is the code: library(e1071) data(iris) attach(iris) class_label <- names(iris)[1] myformula <- formula(paste(class_label,"~ .")) mymodel<-naiveBayes(myformula, iris,cross=3) predict(mymodel,iris) ##Error in object$tables[[v]] :

Hello, R-users,   I have a datafile with 37313 records and each record has 5 different measurements on the same variables. The format looks like this: treeID, VIG0, VIG1, VIG2, VIG3, VIG4 I was trying to convert the one row record to 5 rows record with format like this (treeID, MEASUREMENT, VIGOR). My code like this:   treeMeas<-matrix(data=0,nrow=(length(tree1$indivTree)*5), ncol=3)

Full_Name: Steven King Version: 1.16 OS: OSX vesion 10.4.8 Submission from: (NULL) (71.126.161.149) Setting a matrix is a function - the failure occurs only on 2 X 2 matrices. x<-matrix(1:4,nrow=2) > x [,1] [,2] [1,] 1 3 [2,] 2 4 > x[x]<-2 Error: subscript out of bounds

Hi All, I am trying to replace the "NA" values in a matrix by using the following function: it gets a "name" of the matrix or list or vector and turns it to a matrix called "m". then checks the elements of the matrix and if any of them is "NA" replace them with "0". rep=function(name){ m=as.matrix(name) for(i in 1:length(m)){ for(j in

Hallo, I'd like to write a GUI (first choice with GTK+). I've surfed through the R- an Omegahat-Pages, because I'd like to use RGTK2, GTK 2.10.11 in combination with glade on Windows XP (perhaps later Unix, Mac). I've found a lot of different information. Because of the information I'm not sure, if this combination is running on Windows XP and I'm unsure how it works. Is

How can locate in my program an error of that kind (Error: subscript out of bounds)? -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch

Hi, I'm trying to calculate euclidean distance for my matrix rx1. Its a big matrix with 947 elements. However when i do the following, for(k in 1:947) for(m in (k+1):947){ A =rbind(A,c(k,m,ED(rx1[,k], rx1[,m]))) } I get the following error: ED(rx1[,k], rx1[,m]) : subscript out of bounds I checked for k in 1:100 and it runs fine; its a huge matrix and takes atleast an hour to run before I

I don't know the details of pls (in the pls.pcr package, I assume), but if you use validation="CV", that says you want to use CV to select the best number of components. Then why would you specify ncomp as well? Andy > From: ryszard.czerminski at pharma.novartis.com > > When I try to use ncomp parameter in pls procedure I get > following error: > > >

Dear all, ? I've only (very) recently started to use R (so please be easy on me if I may omit to mention relevant information or have overlooked fairly basic steps to solving the problem, since I do not have a lot of experience) because I'm interested in multinomial processing tree modeling with the TreeBUGS package (Heck, Arnold & Arnold 2017 - TreeBUGS: An R package for hierarchical

Hi list, I am using the capscale function in vegan_2.0-7 to do a constrained principal coordinates analysis, and I kept getting the following error message: Error in Y.r[, oo, drop = FALSE] : subscript out of bounds I googled but I couldn't find an answer. Could anyone tell me why this error msg and what to do? Here is the command I used:

m<-matrix(byrow=FALSE) t<-as.list(na.exclude(x)) j<-0 o<-0 for(i in 1:998) { d<- 5*(i-1)+3 if(t[[d]][[1]]>80) { j<-j+1 e[j]<-d l<-length(t[[d]]) u<-t[[d]] price_rand<-t[[d-1]] n<-0 for(k in 1:l) { if((u[k]>49)&&(u[k]<51)) { n<-n+1 m[n,j]<-price_rand[k] } } } } I am getting error in assigning the values to a matrix. *Error in m[n, j]

I am running R version 2.4.1 on Windows XP. I have a question regarding the datadist() function from the Design library. I have a data.frame (call it my.data) with 4 columns. When I submit the code datadist(data=my.data) I get the following error message: Error in X[[1]] : subscript out of bounds I suspect there may be something wrong with my data.frame (I'm certain there is nothing

I work with Windows, R version 2.4.1 I'm trying to do a discriminant analysis and, in trying to figure out how to do it following the example from R help, I'm getting an error that says 'subscript out of bounds'. I don't know what this means and how to solve it (I'm very new with R) I'm doing everything in this made-up test matrix: group var1 var2 var3 1 1