similar to: launch of free R/Bioconductor Cloud Computing web-service

Dear list, I am trying to find some place on internet for R cloud computing.I have some questions about it. I followed this webpage: http://www.r-bloggers.com/crdata-org-to-shut-down/ trying to gain some knowledge about where I can find free cloud computing service for R. It looks like there are 2 option: crdata.org and cloudstat.org. Since the first one has been temporarily shut down. I

Dear R users & developers, Seth Falcon and Martin Morgan are teaching Advanced R Programming and Bioconductor 30 March - 1 April 2007 at the Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. This two-day course focuses on programming skills required to develop software for statistical analysis of high-throughput genomic data using R and Bioconductor. Lectures and practical sessions

Hi, I am new to using R and Bioconductor. My first attempt at installing R seemed successful. Then while attempting to getBioC() I had to force quit the R application since I had to attend to something else urgently. When i returned and tried to getBioC, I am getting errors indicating that there is a lock on some files. So i would like to uninstall/remove all R components and Bioconductor

Dear support, I am new to R. I installed R 2.8.1 under Windows, and upon starting it I get the message that it requires Bioconductor version 2.3. I thought this was kind of installed in parallel or so. Where can I upgrade it ? Best regards, Andreas -- Andreas Scherer, PhD,APM CEO Spheromics Pajutie 3A 81100 Kontiolahti Finland Phone +358 (0)400 138 510 FAX +358 (0)13 731 431 Skype

[BioC] ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14 We will present a short course on using Bioconductor, primarily aimed at analyzing microarray data, over 2 1/2 days in April. The course will be a mix of lectures and practical labs. Instructors: Robert Gentleman, Seth Falcon, Martin Morgan, and Nolwenn Le Meur Topics: Introduction to R Preprocessing of

Dear all, Is there anyway too generate MA plot for 2 qPCR assays (an array of 2x 400). -- View this message in context: http://r.789695.n4.nabble.com/Bioconductor-MA-plot-for-qPCR-array-tp4182805p4182805.html Sent from the R help mailing list archive at Nabble.com.

I know others have asked similar questions to the R developers, but I could not find the solution to this question. Please forgive me if I have missed a crucial point in a previous post. I would like to submit a package to CRAN that depends on the bioconductor package "edgeR". Listing "edgeR" under the Depends or Imports lines in the DESCRIPTION file for my package causes an

I have built and uploaded to CRAN the Carbon version of R for MacOS/MacOSX. You'll find the base set (rm151.sit) and the recommended packages (recommended.sit) separately or all in one single file (rm151_FULL.sit) on CRAN and their mirrors soon. I have also built the Bioconductor suite of packages (corresponding to the Bioconductor_1.0.tgz file) as it seems to be one of the most

I have built and uploaded to CRAN the Carbon version of R for MacOS/MacOSX. You'll find the base set (rm151.sit) and the recommended packages (recommended.sit) separately or all in one single file (rm151_FULL.sit) on CRAN and their mirrors soon. I have also built the Bioconductor suite of packages (corresponding to the Bioconductor_1.0.tgz file) as it seems to be one of the most

Hi all! While I am trying to read .cel files with oligo package: afbatch=read.celfiles(list.celfiles()) I get an error: Package 'pd.mirna.1.0.2xgain' was not found in the BioConductor repository How can I overcome this? Thank you in advance

Hola Eric, Cual es tu sessionInfo()? Gracias, Jorge.- Sent from my phone. Please excuse my brevity and misspelling. > On Oct 23, 2013, at 6:59 AM, neo <ericconchamunoz en gmail.com> wrote: > > No se bien si hacer la pregunta aca, pero en la lista de correo de > bioconductor he tenido algunos problemas para hacer la consulta. > > Por un error actualice R de la version

David Henderson <DNADave@u.arizona.edu> writes: > > Now that both PC and Mac have 64-bit CPU capable of addressing several > > gigabytes of RAM, will bioconductor be able to take advantage of this > > new feature without a major revision? I remember having a trouble > > trying to process 100+ chips at once due to limitation in addressable > > memory, so

Hello ... As part of the work we are doing to provide useful information on the Bioconductor Developer Page (available by clicking on the 'Developer Page' link on the left hand side of www.bioconductor.org), we would like to direct people's attention to the section entitled "Programmer's Reference". The intent is to provide papers and guidelines that provide useful tips

Full_Name: Eric Libby Version: 2.1.1 OS: OS Tiger Submission from: (NULL) (65.93.158.117) I am trying to analyze microarray data of 42 human arrays. I typed in the following instructions: library(affy) Data <-ReadAffy() eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmcorrect.method="pmonly",summary.method="liwong") And I get some

Dear R Developers, I am developing a package to submit to bioconductor. Right now, a gene-set sample data is saved as a data frame. Each row contains a probe set and its corresponding gene-set name ( mutiple probe -set may map to a gene-set name) . Is this type of data format OK to be submitted to bioconductor? Or I have to make it GeneCollectionSet class? ( If so, I have to change a lot of my

Today, Insightful Corporation (www.insightful.com) is announcing the availability of S+ArrayAnalyzer, a new, integrated module for S-PLUS based on collaboration with the BioConductor Project (www.bioconductor.org) - an open source and open development software project for the analysis and comprehension of genomic data. The collaboration between Insightful and BioConductor delivers benefits to

Today, Insightful Corporation (www.insightful.com) is announcing the availability of S+ArrayAnalyzer, a new, integrated module for S-PLUS based on collaboration with the BioConductor Project (www.bioconductor.org) - an open source and open development software project for the analysis and comprehension of genomic data. The collaboration between Insightful and BioConductor delivers benefits to

Hi, I been trying to install bioconducter into R using the script on the bioconductor home page. However, I get this error message: > source("http://www.bioconductor.org/biocLite.R") Error in file(file, "r", encoding = encoding) : unable to open connection In addition: Warning message: unable to connect to 'www.bioconductor.org' on port 80. It is maybe

The page is either too busy, or there is something seriously wrong with access to this page. Most of the time, trying to reach www.bioconductor.org results in failure. Only once in a blue moon, do I get through. In fact, thus far, I have not been able to install bioconductor, since the first source(...) command from the R command window -- following instruction on www.bioconductor.org page,

Not sure if this is an R or BioC question so will cross-post. I cannot extract R code from vignettes because system.file("doc", "my.bioc.package") returns "". I got this code directly off of http://www.bioconductor.org/docs/vignettes.html. A specific example using siggenes follows but I have tested this using multiple packages, including those for which I can