Dear R Developers, I am developing a package to submit to bioconductor. Right now, a gene-set sample data is saved as a data frame. Each row contains a probe set and its corresponding gene-set name ( mutiple probe -set may map to a gene-set name) . Is this type of data format OK to be submitted to bioconductor? Or I have to make it GeneCollectionSet class? ( If so, I have to change a lot of my R functions). Your resonse is highly appreciated! Lani [[alternative HTML version deleted]]
Martin Morgan
2010-Oct-12 16:06 UTC
[Rd] data set mube S4 class to be submitted to Bioconductor
On 10/12/2010 07:38 AM, lan gao wrote:> Dear R Developers, > > I am developing a package to submit to bioconductor. Right now, a gene-set > sample data is saved as a data frame. Each row contains a probe set and its > corresponding gene-set name ( mutiple probe -set may map to a gene-set name) > . > > Is this type of data format OK to be submitted to bioconductor? Or I have to > make it GeneCollectionSet class? ( If so, I have to change a lot of my R > functions). > > Your resonse is highly appreciated!See the answer to your original post here https://stat.ethz.ch/pipermail/bioconductor/2010-October/035781.html The 'Bioc-devel' list mentioned there is https://stat.ethz.ch/mailman/listinfo/bioc-devel referenced from http://bioconductor.org/help/mailing-list/ Asking on the bioc-devel mailing list will not change the original answer, but is the appropriate place to ask future questions about developing Bioconductor packages. Martin> > > Lani > > [[alternative HTML version deleted]] > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel-- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793