similar to: Deleting duplicate values in a correlation matrix

Dear Rsync Users, Please can I have a bit of rsync advice? I am trying to rsync a file called. 'Draft text - with Holley comments.doc' from machine a to machine b. Unfortunately this isn't working because I think rsync recognises the - character and thinks it's an option. I have tried escaping this out as well as putting it all in " " but neither seems to work

Hello, I am exporting a graph in "gml" format from igraph 0.5.5. When I open the file in Cytoscape v.2.7 I can't map the color attribute that I assign to the graph when I export it from igraph. Could anyone help me in this? Thanks. -- Warm Regards, Sandeep Amberkar BioQuant,BQ26, Im Neuenheimer Feld 267, D-69120,Heidelberg Tel: +49-6221-5451354 [[alternative HTML version

Hi,all, I have a problem about launching SJava in R from external application (Cytoscape). My R version is 2.1.0 and Sjava version is 0.68. R is installed by issuing 1. configure --enable-R-shlib 2. make 3. make check 4. make install SJava is installed by issuing "R CMD INSTALL -c SJava_version_.tar.gz". The LD_LIBRARY_PATH is set in .bash_profile by

Hi, I'm trying to use the XML-RPC client in the SSOAP package to connect to a service that I have created. From other languages (Perl, Python, Ruby) this is not a problem but the SSOAP client gives the following error: Error in .XMLRPC("http://localhost:9000", "Cytoscape.test", .opts = list(verbose = TRUE)) : Failed to parse XML-RPC request: Content is not allowed in

Hi Can some one please point out where i am wrong. I am trying to position set of nodes column-wise in cytoscape using RCytoscape A----D B----E C----F ------------------- g <- new ('graphNEL', edgemode='undirected') cw <- CytoscapeWindow ('smallExample', graph=RCytoscape::makeSimpleGraph()) layout (cw, 'jgraph-spring') redraw(cw) nodesFr = c('A',

Hello Everyone! This is my first post to the mailing list so please forgive me if I am a bit deflected from the general format of this mailing list posts. Since I need help in this matter urgently, I would cover up any of my mistakes in posting later. That said, I have a problem in merging 2 graphs that have common nodes between them. I have a graph G1, that have nodes N1 and edge set E1 and

Has anyone coded (in R) a spatial voter model with mutation (e.g., Kimura and Weiss 1964, Holley and Liggett 1975, Durrett and Levin 1996)? In principle, it is quite straightforward, but useful simulations require many many iterations, making my "straightforward" version too time intensive. I am happy to share my version (without mutation, below), for what it is worth. Thank you in

Dear All, Thank you kindly for such detailed replies. I was looking to overlay data using algorithms so that i am able to tell which genes are differentially expressed due to changes in copy number. I did a pubmed search and found only 7 literature pieces all of which use in-house algorithms. I am yet to explore Gviz since it wouldn't work on R 2.14, would try it after upgrading to R 2.15.

Hi, I used GOstats to perform enrichment test on a set of genes (20). There are 7 GO terms with pvalue less than cuttoff and therefore shown in the result table. How can I get the information that which gene in the input gene set belong to which GO term of these enriched GO terms? Thanks for any comments. best, Tim [[alternative HTML version deleted]]

Hi there, I need a network builder and it can change the node size and color; I am not sure if network package in R can do this or not. The other functions I wanted have been found in that package. BTW, if there is another package in R relating to this, please suggest too. Thanks, Weiwei -- Weiwei Shi, Ph.D Research Scientist "Did you always know?" "No, I did not. But I