similar to: hdf files

*Hi everyone, I am a new subscriber, so I hope I'm posting in the right way. I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5 R package; in downloaded a small sample file from the hdf5 website and I could correctly load it. But when I try to load my file: * require(hdf5) rm(list=ls()) ls() hdf5load("my_file.h5", verbosity=3) *I get this error message: *

Hello All, I just signed up to this list, so I apologize if this question has been asked before. I am trying to load an hdf5 file into R and running into some problems. Here are the steps I took to configure my environment: * R 2.10.0 (x64) on Mac OS X 10.6 * hdf5 1.8.3 installed via macports * hdf5_1.6.9.tar.gz from CRAN I suspect the problem I am having relates to

Dear all, I'm trying to fix a subtle bug in the hdf5 package. This package provides an interfaces to the HDF5 library and hence allows one to load data into R from files in the HDF5 format. The bug appeared during a period in which R changed but the package did not. I include below both the R and C code, stripped of everything except what is needed to show the bug. What is supposed to

The package works fine, but it seems not to provide access to fields, but only to the whole data in a certain file (function hdf5load(file, load = TRUE, verbosity = 0, tidy = FALSE)) Since hdf5 organizes the data and metadata in a hierarchical structure, we must explore in our problem (file>7GB), but it seems not possible with the functions in the package. Any suggestions? Please, let me know

Dear R-users, I'm experiencing a segmentation fault when using hdf5load(file,load=FALSE). Library(hdf5) loads without problems but when loading a file, R crashes. I compiled R under Unix (Solaris for Sun). There is nothing wrong with the files, as I can run the same script at another place where R runs under Linux. Is it possible it has something to do with the hdf5 libraries where

Dear All, I have data in HDF file format and would like to read it into R. I have tried the package hdf5 without success. Any ideas and suggestions?? Kind regards, Katrin -- Katrin Fleischer Vrije Universiteit Amsterdam Faculty of Earth and Life Sciences Subdepartment Hydrolgy and Geo-Environmental Sciences Room E-360 De Boelelaan 1085 1081 HV AMSTERDAM Tel: +31 20 59 87391

Hi all, I'm testing the use of the hdf5 R library under Windows XP. With some simple example (an R list with several subobjects as showed in the examples in the library) the library exports and imports .hdf files adequately. However, if I try to open the exported file with another program (HDFView 2.5) I receive the message that the file is an unsupported format. HDFView 2.5 does not seems to

Using RedHat Linux 7.0, R-1.2.2, R-hdf5-1.2 library, I want to load a dataset, do some stuff with it, then erase its objects, get an other, repeat. My friend wrote a function which tried to clear away all the objects. At the end, it uses rm() to remove objects. This is the same way we do it interactively, from the R prompt: testLoadSeveralHDF <- function(numFiles) { for (i in

I've used the HDF5 library to bring some data into R. THe verbose output looks like this: > hdf5load("hdfGraphWed_Mar_16_13_33_37_2005.hdf",load=T,verbosity=1,tidy=T) Processing object: cprSeats ...... which is a Group Processing object: Seats 0 ...... its a dataset......Finished dataset Processing object: Seats 1 ...... its a dataset......Finished dataset Processing object:

I'm an R newbie, so please forgive if this question has been asked and answered many times before on this mailing list. I can't find anything in the manual (Notes or R), the FAQ or on CRAN, so... Has anyone implemented an interface so R can read NCSA's HDF? -- Terry J. Westley, Principal Engineer Veridian Engineering, Calspan Operations P.O. Box 400, Buffalo, NY 14225 twestley at

Hi, I am just beginning to use R for Windows and have two (perhaps naive) questions: 1. I am wanting to produce maps of the New Zealand coastline using R. I am aware of the map function in S-plus and was wondering if anyone had ported it to R yet. I could use the 'world' database for the data source but since it is very large I was also wondering if anyone had fine scale long and lat

Hi, I've been playing with R for only a few days, so I'm not terribly familiar with it yet. Has anyone ever done any work using HDF or NetCDF files with R? Both file formats have libraries which can be linked to a program to read and write data to these formats. Is this sort of thing possible with R? We are planning to use the HDF format to store experimental data collected by some

Hello: Has anyone successfully installed the package hdf5-1.4.7 in R version 1.7.1? I get a fatal error with a core dump (see below) whenever I try to use hdf5load. Since I'm in the process of moving to a new machine, I'm not sure whether this is due to (my installations of) the HDF5 libs or the hdf5 package for R. Just for the record, the HDF5 data files were correctly generated in the

Has anyone succeeded in using HDF5 in R? Using Solaris R version 0.64.0: 1) R was configured in this way: cd /home/westley/R/R-0.64.0 setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:/home/westley/HDF/lib ./configure \ --prefix=/home/westley/R \ --with-g77=/usr/calspan/gnu/bin/g77 \ --x-lib=/usr/openwin/lib \ --with-hdf5-libs=/home/westley/HDF/lib 2) But, when I attempt to

Hi, I have many printers installed under cups on a samba server, so the printers can be used and installed on Mac and PCs. My problem appeared with some new printers I bought and their PPDs. Under Cups, all the PPD options (Page Sizes, Trays, etc..) appear if I looked at them from the cups printer configuration page or if I use it from a Mac. But if I install the printers under windows

Summary: patch to add environment parameter to load() to allow -------- specification of destination environment. --> Patch against R 0.63.2 appended at end of this message. <-- Story: ------ I've been running some rather long MCMC chains, which occasionally crash, either due to an "Invalid tag in name extraction" error, or due to the machine going down. (I'm playing

--=-=-= Included below are: 1) Diffs to to remove HDF5 from R 2) Diffs to pass thru --with-* options to a module's configure script during "R INSTALL". (To reiterate a plea for this capability...) This applies only to Unix, the Windows (mingw32 in my case) build approach of passing in make variables like *-CFLAGS and *-LDFLAGS works fine. The only hitch

Hi I have an ocfs2 volume (1.4.1) on lvm2, which is made available on 2 nodes via dual primary drbd that is on it. I wanted to backup my volume, so naturally I made a snapshot of it via the lvm2, and tried to mount it for backing up. However, I got the following error in dmesg : [319981.478168] (23483,0):ocfs2_fill_super:700 ERROR: Unable to create per-mount debugfs root. I then searched

I am trying to connect Asterisk and Openfire together, but it's not yet working completely... I don't know for sure if my manager.conf-file is set correctly. I use this manager.conf file just to let Openfire talk to Asterisk... [general] displaysystemname = yes enabled = yes webenabled = yes (is this necessary for Openfire ???) port = 5038 bindaddr = 0.0.0.0 [openfire] secret=XXXXXX

Are there any Nouveau developers in Europe (preferably in the UK) who would like a GeForce 7600 GS? It's the AGP version and is no longer useful to me. I've got the power dongle (it requires a 350W power supply) and a S-Video to composite dongle. Specs: BFG GeForce 7600 GS OC (AGP) 512MB RAM DVI + VGA 1 x power dongle (the sort that plug into pata drives) 1 x "HDTV" dongle