--=-=-
Included below are:
1) Diffs to to remove HDF5 from R
2) Diffs to pass thru --with-* options to a module's configure
script during "R INSTALL". (To reiterate a plea for this
capability...) This applies only to Unix, the Windows (mingw32 in
my case) build approach of passing in make variables like
*-CFLAGS and *-LDFLAGS works fine. The only hitch with the
Windows install is that I had to drop the `bundle' wrapper, which
was useful for Unix in order to give the package a recognizable
name with version number (Rhdf5-0.0), but the installed package
with R a minimal name (hdf5).
3) The module itself, as an attachment.
Index: aclocal.m4
==================================================================RCS file:
/home/rcvs/src/R/aclocal.m4,v
retrieving revision 1.30
diff -c -r1.30 aclocal.m4
*** aclocal.m4 2000/01/21 07:49:19 1.30
--- aclocal.m4 2000/01/29 00:22:35
***************
*** 543,570 ****
AC_MSG_WARN([I found f2c but not libf2c, or libF77 and libI77])
fi])
dnl
- dnl R_LIB_HDF5
- dnl
- AC_DEFUN(R_LIB_HDF5,
- [ AC_CHECK_LIB(hdf5, main,
- [ ac_save_LIBS="${LIBS}"
- LIBS="-lhdf5 ${LIBS}"
- AC_CACHE_CHECK([for HDF5 version >= 1.2],
- r_cv_lib_hdf5,
- AC_TRY_LINK(
- [#include <hdf5.h>],
- [ H5T_pers_t convtype = H5T_PERS_SOFT;
- H5Tclose ((hid_t) 0);],
- r_cv_lib_hdf5=yes,
- r_cv_lib_hdf5=no))
- if test "${r_cv_lib_hdf5}" = yes; then
- AC_DEFINE(HAVE_HDF5)
- else
- LIBS=${ac_save_LIBS}
- fi
- ])
- ])
- dnl
dnl R_FUNC___SETFPUCW
dnl
AC_DEFUN(R_FUNC___SETFPUCW,
--- 543,548 ----
Index: configure.in
==================================================================RCS file:
/home/rcvs/src/R/configure.in,v
retrieving revision 1.159
diff -c -r1.159 configure.in
*** configure.in 2000/01/21 16:49:18 1.159
--- configure.in 2000/01/29 00:22:50
***************
*** 342,348 ****
))
AC_CHECK_LIB(dl, dlopen)
AC_CHECK_LIB(z, main)
- R_LIB_HDF5
BLAS="blas.o"
if ${use_dxml}; then
AC_CHECK_LIB(dxml, main, FLIBS="-ldxml ${FLIBS}"
BLAS="")
--- 342,347 ----
***************
*** 394,400 ****
AC_HEADER_DIRENT
AC_HEADER_SYS_WAIT
AC_CHECK_HEADERS(dl.h dlfcn.h elf.h floatingpoint.h fpu_control.h \
! hdf5.h ieee754.h ieeefp.h readline/history.h readline/readline.h \
rpc/rpc.h rpc/xdr.h sys/param.h sys/stat.h sys/time.h sys/times.h \
unistd.h locale.h)
case "${host}" in
--- 393,399 ----
AC_HEADER_DIRENT
AC_HEADER_SYS_WAIT
AC_CHECK_HEADERS(dl.h dlfcn.h elf.h floatingpoint.h fpu_control.h \
! ieee754.h ieeefp.h readline/history.h readline/readline.h \
rpc/rpc.h rpc/xdr.h sys/param.h sys/stat.h sys/time.h sys/times.h \
unistd.h locale.h)
case "${host}" in
Index: src/main/Makefile.in
==================================================================RCS file:
/home/rcvs/src/R/src/main/Makefile.in,v
retrieving revision 1.51
diff -c -r1.51 Makefile.in
*** src/main/Makefile.in 2000/01/27 05:42:06 1.51
--- src/main/Makefile.in 2000/01/29 00:23:10
***************
*** 45,51 ****
gram.c \
gram-ex.c \
graphics.c \
- hdf5.c \
iosupport.c \
list.c \
logic.c \
--- 45,50 ----
Index: src/main/names.c
==================================================================RCS file:
/home/rcvs/src/R/src/main/names.c,v
retrieving revision 1.119
diff -c -r1.119 names.c
*** src/main/names.c 2000/01/27 05:41:22 1.119
--- src/main/names.c 2000/01/29 00:23:18
***************
*** 515,522 ****
{"parse", do_parse, 0, 11, 4, PP_FUNCALL},
{"save", do_save, 0, 111, 4, PP_FUNCALL},
{"load", do_load, 0, 111, 2, PP_FUNCALL},
- {"hdf5save", do_hdf5save, 0, 0, -1, PP_FUNCALL},
- {"hdf5load", do_hdf5load, 0, 11, 2, PP_FUNCALL},
{"deparse", do_deparse, 0, 11, 2, PP_FUNCALL},
{"dput", do_dput, 0, 111, 2, PP_FUNCALL},
{"dump", do_dump, 0, 111, 2, PP_FUNCALL},
--- 515,520 ----
Index: src/main/names.h
==================================================================RCS file:
/home/rcvs/src/R/src/main/names.h,v
retrieving revision 1.51
diff -c -r1.51 names.h
*** src/main/names.h 2000/01/21 17:54:06 1.51
--- src/main/names.h 2000/01/29 00:23:19
***************
*** 181,188 ****
SEXP do_gray(SEXP, SEXP, SEXP, SEXP);
SEXP do_grep(SEXP, SEXP, SEXP, SEXP);
SEXP do_gsub(SEXP, SEXP, SEXP, SEXP);
- SEXP do_hdf5save (SEXP, SEXP, SEXP, SEXP);
- SEXP do_hdf5load (SEXP, SEXP, SEXP, SEXP);
SEXP do_hsv(SEXP, SEXP, SEXP, SEXP);
SEXP do_identify(SEXP, SEXP, SEXP, SEXP);
SEXP do_if(SEXP, SEXP, SEXP, SEXP);
--- 181,186 ----
Index: src/scripts/INSTALL.in
==================================================================RCS file:
/home/rcvs/src/R/src/scripts/INSTALL.in,v
retrieving revision 1.29
diff -c -r1.29 INSTALL.in
*** src/scripts/INSTALL.in 2000/01/24 19:48:48 1.29
--- src/scripts/INSTALL.in 2000/01/29 00:23:21
***************
*** 107,112 ****
--- 107,116 ----
lib=${2}; shift ;;
--library=*)
lib=`echo "${1}" | sed -e 's/[^=]*=//'` ;;
+ --with-*=*)
+ configure_args="$configure_args $1";;
+ --with-*)
+ configure_args="$configure_args $1=$2"; shift ;;
*)
if test -f "${1}"; then
mkdir -p ${tmpdir}
***************
*** 181,187 ****
echo "Installing package \`${pkg}' ..."
if test -x ./configure ; then
! ./configure
fi
if test -d src; then
--- 185,191 ----
echo "Installing package \`${pkg}' ..."
if test -x ./configure ; then
! ./configure $configure_args
fi
if test -d src; then
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