similar to: Plotting Mona clustering result

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1

Hello all, I what to print the banner plot that is output from the mona method in the cluster package but the problem is I dont want to print all that red ink. Here is an example: data(animals) ma <- mona(animals) ma ## Plot similar to Figure 10 in Struyf et al (1996) plot(ma) I can change the bar color by using the argument col=c(0,0) - plot(ma,col=c(0,0)) - but then the variable labels also

Doing the normal build process [1] for a first time with a R 2.0.0 snapshot -- the Sep 21 version I uploaded to Debian's 'experimental' section two days ago, ended in failure. The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2

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Hi there, I'm doing some clustering analysis and try to find all the algorithms related to clustering in R. Here is the list of the algorithms I found. But I'm not sure if It's the complete list. Could you please check it and see if there're other ones? Thank you very much! P.S.: List of the algorithms related to clustering: (1) Hierarchical methods hclust

Hi! I am trying to calculate a dissimilarity matrix using daisy. The matrix vectver is binary as i test with: > levels(as.factor(vectver)) [1] "0" "1" But the call to daisy gives me the following error message.: > dfl1 <- daisy(vectver, type = list(asymm = c(1:length(vectver[,1])))) Error in daisy(vectver, type = list(asymm = c(1:length(vectver[, 1])))) : at least

You might find this useful. I have modified the R 'edit' function by adding attr(x,"date.modified") <- substring(Sys.time(),1,19) before the last line. I then changed to ls() to sort functions, paste function name and time stamp from the contents of the "date.modified" attribute before output. Not particularly tidy but functional.

I feel the need to apologize for my previous email to the list. I was thinking that I was sharing something that I am currently exited with, with my associates. I now realize that I was sooo... off-topic, it's ridiculous. Sorry for the improper post to the list. Feel free to keep any further comments, concerning my improper use of the list, off-list. Thank You, Steven B TeamVie at

Please cc me when replying to the list. With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X 10.4.2 (8C46): Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some don't, e.g., mgcv, spatstat, and the following (Matrix, cluster): trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ Matrix_0.98-3.tar.gz' Content type

Hi, I am trying to plot a 3d scatter plot using the rgl package but am having trouble. I have a matrix containing x, y and z co-ordinates and a fourth element related to a count variable. I would like to plot the points using plot3d with the sizes of the points related to the fourth element in the matrix. Is this possible with plot3d or do I need to use something else? I include a small example

Hello All, I'm having some trouble figuring out what the clearest way to plot my k-means clustering result on an my existing MDS. First I performed MDS on my distance matrix (note: I performed k-means on the MDS coordinates because applying a euclidean distance measure to my raw data would have been inappropriate) canto.MDS<-cmdscale(canto) I then figured out what would be my optimum

Dear R-users, If I would like to track the date when an R-object (specifically an R- function) was modified, how can I achieve that? Furthermore, how can I sort these objects based on date modified? Your help is greatly appreciated All the best Mona -- ***************************************************** *Dr. Mona Kanaan * *Department of Epidemiology

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

Hi As a beginer with R I have been trying to plot dendrograms for individual groups after using cutree. The example in the help files appears to work fine for Euclidean distances using the "average" clustering method. However, when I use the "Ward" method the the reprocessed subgroup does not appear to have the same structure as it did when the whole dataset was processed. Is

Hi (and Merry Christmas), I am trying to compile R on an AIX IBM machine using the native C and FORTRAN compilers... and everything goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include

Hi, I have had a look around the forums and I can't seem to find anything that works with my data. I have lats, longs, time, tidal speed and direction and need to plot this in an xy plot to determine changes over time. contour and cloud have been recommended to me as a way to do this but I can't figure out how to get 5 dimensions into this. I want lat and long as my x and y, time as my

Hello! I 'm new to R and need your help in one question... I did cluster analysis using kmeans function. I load data from file: This file also contains headers for objects I want to cluster. After making a clustering procedure I display result on plot: And it shows only points (i.e. objects) without their names. Is there any way to mark points on this plot with their names from file? Your

Hey group, I have a problem of drawing dendrogram as the result of my program written in C. My algorithm is a approximation algorithm for single linkage method. AS a result I will get the following data: [Average distance] [cluster A] [cluster B] For example: 42.593141 1 26 42.593141 4 6 42.593141 123 124 42.593141 4 113 74.244206 1 123 74.244206 4 133 74.244206 1 36 So far I have used C to