similar to: How to get MSS value for individual clusters.

Hi, I got command to execute R code from Mark. but it was showing error.. Error in library(hopach) : there is no package called 'hopach' Does it mean this library hopach is not installed. But I have installed complete Bioconductor package. I am confused. can you help me in this thanks Regards, -- Prateek Singh Final year Bioinformatics(BTech) Vellore Institute Of Technology

Hi, I have 'R' code in file. saved it as exmaple.r here is the code....... library("hopach") GSE <- read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE) gene.dist <- distancematrix(t(GSE),d="euclid") gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med") labelstosil(gene.hobj$cluster$label,gene.dist) I dont

Hi, I am new to LLVM and I find TableGen language really cryptic. The reference manual to the language is not helpful either. I can look at the existing .td file and reverse engineer but I am looking for a detailed manual. Specifically, I have below questions: 1. What is a basic syntax for writing a dag? From the lang ref manual I can see that its something like operator followed by ArgList which

The context: samba 3.0+windbind+MS ADS Server 2003 I can't see or access to my samba share through my AD 2003 domain To summarize: The Kerberos connection: ok The record of Samba server in the AD : ok The record of Samba server in the Server 2003 DNS: ok The nsdc daemon is shutdown. The facts: I can see the Samba in the Active Directory manager, but can't manage it (even the

Dear All, I am using Silhouette to estimate the number of clusters in a microarray dataset. Initially, I used the iris data to test my piece of code as follows: library(cluster) data(iris) mydata<-iris[,1:4] maxk<-15 # at most 15 clusters myindex<-rep(0,maxk) # hold the si values for each k clusters mdist<-1-cor(t(mydata)) #dissimlarity

Hi I'm trying to cluster a continuous dataset with a varying number of clusters and with a restriction that each cluster must have more than 'x' number of observations. I have tried the clara function, using silhouette to give me the neighbouring cluster mediod of each observation, then merging an observation from a cluster with less than 'x' obs. into its' neighbour,

On Tuesday 28 June 2005 15:30, r-help-request at stat.math.ethz.ch wrote: Re : 37. Re: A. Mani : colours in Silhouette (Mulholland, Tom) > > Message: 37 > Date: Tue, 28 Jun 2005 09:08:24 +0800 > From: "Mulholland, Tom" <Tom.Mulholland at dpi.wa.gov.au> > Subject: Re: [R] A. Mani : colours in Silhouette > To: <a_mani_sc_gs at vsnl.net>, <r-help at

Samba version i m using is 3.0.30 over Red hat linux 9 Regards, Prateek Mathur Volker Lendecke <Volker.Lendecke@SerNet.DE> 06/30/2008 03:26 PM Please respond to Volker.Lendecke@SerNet.DE To Prateek.Mathur@lntinfotech.com cc samba@lists.samba.org Subject Re: [Samba] File Change notification in Samba On Mon, Jun 30, 2008 at 02:54:32PM +0530, Prateek.Mathur@lntinfotech.com

Hi list, When I was using 'silhouette' from the 'cluster' package to calculate clustering performances, R crashed. I traced the problem to the fact that my clustering labels only have 2's and 3's. when I replaced them with 1's and 2's, the problem was solved. Is the function purposely written in this way so when I have clustering labels, "2" and

> On 25/05/2020 13:00 Peter Nabbefeld <peter.nabbefeld at gmx.de> wrote: > > > Hello, > > from time to time I keep getting problems with some emails causing > signal 6. I've already reported those, but it seems not to be easy to > find the cause. From the logs, it seems to occur in sieve implementation. > > I've checked the email envelopes tody by

Dear R users, I am mailing you about the graphical output of silhouette (cluster package) From the example of silhouette in help(silhouette): > ar <- agnes(ruspini) > si3 <- silhouette(cutree(ar, k = 5), # k = 4 gave the same as pam() above + daisy(ruspini)) > plot(si3, nmax = 80, cex.names = 0.5) from which one may conclude that group 1 is composed by

Hello all, My name is Sahil Yerawar, Btech 3rd Year Undergraduate student at IIT-Hyderabad. I am currently working on improving vectorization diagnostic remarks in LoopVectorize.cpp. I have some familiarity with LLVM as we studied it in Compiler Engineering Course at IITH. Here is our first effort to improve one of the remarks. https://reviews.llvm.org/D44067 You might want to have a look at

I'm fairly new to the silhouette functionality in the cluster package, so apologize if I'm asking something naive. If I run the 'agnes(ruspini)' example from the silhouette section of the cluster package vignette, and assign colours to clusters, two clusters have what appear to be incorrect colours in the silhouette plot. library(cluster) data(ruspini) ar<- agnes(ruspini)

For the following code: Type * type = IntegerType::getInt32Ty(getGlobalContext()); IRBuilder<> builder(BB); std::set<Value *> Vset; Value * Vresult=0; for(std::set<Value*>::iterator Vit=Vset.begin();Vit!=Vset.end();Vit++) { Vresult=builder.CreateOr(Vit, Vresult, "WaitOr"); } Vset is inserted in previous loop by 0 or 1 The error

On 25/05/2020 12:06, Aki Tuomi wrote: >> On 25/05/2020 13:00 Peter Nabbefeld <peter.nabbefeld at gmx.de> wrote: >> >> >> Hello, >> >> from time to time I keep getting problems with some emails causing >> signal 6. I've already reported those, but it seems not to be easy to >> find the cause. From the logs, it seems to occur in sieve

Hi, I am using fanny and I have estrange results. I am wondering if someone out there can help me understand why this happens. First of all in most of my tries, it gives me a result in which each object has equal membership in all clusters. I have read that that means "the clustering is entirely fuzzy". Looking at the graphics it is really difficult to understand how objects with so

Hello, from time to time I keep getting problems with some emails causing signal 6. I've already reported those, but it seems not to be easy to find the cause. From the logs, it seems to occur in sieve implementation. I've checked the email envelopes tody by accident, probably this part of my telnet session might help: a11 fetch 1 all * 1 FETCH (RFC822.SIZE 16750 INTERNALDATE

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Sorry for the long message. I'm doing my best to try to explain myself. I have fitted a spline to my data, I have fitted a spline, filled in the missing data by replicating the spline coefficients associated to the last node. I obtained a number of dendograms by different combination of distance and link-method by calling DIST and AGNES. The agglomerative coefficient is very high (~ 0.99) for

Dear all, I am trying (without much success) to use the fuction 'silhouette'. Would anyone encountered that before (or would know where I am wrong ?) Please find below the R ouput. Thanks in advance, L. > s <- silhouette(ct, as.dist(metric)) Error in "[<-"(*tmp*, iC, "sil_width", value = s.i) : number of items to replace is not a multiple of replacement