similar to: Affycoretools

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hi, I am new to R. I am downloaded the installer for R 2.9.1, and that installed just fine. Then I want to install Biocondcutor packages. According to bioconductor website, I input the following commands. > source("http://bioconductor.org/biocLite.R") > bioLite() Error: could not find function "bioLite" What am I doing wrong here? Thanks -- View this message in

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

Hello, I wanted to install MergeMaid package in v 2.2.1. I could install it but couldn't use without its dependant, Biobase. at biobase installation, I got the following error message In method for function "split": expanding the signature to include omitted arguments in definition: drop = "missing" Error in .MakeSignature(new("signature"), def, signature) :

Hello - I'm trying to compile R 1.7.0 on a PowerBook running OS X 10.2.5. I've compiled R (1.6.2) successfully before on this machine, under either 10.2.3 or 10.2.4. My gcc is from the latest Apple Developer Tools release and the g77 is up-to-date via Fink. R passes ./configure just fine, with the following options: R is now configured for powerpc-apple-darwin6.5 Source

I trying to compile R-.1.7.1 under OS X. Configure worked fine; then make crashes with: /sw/lib/libg2c.a(err.o) definition of common _f__formatted (size 4) /sw/lib/libg2c.a(err.o) definition of common _f__hiwater (size 4) /sw/lib/libg2c.a(err.o) definition of common _f__putn (size 4) /sw/lib/libg2c.a(err.o) definition of common _f__reading (size 4) /sw/lib/libg2c.a(err.o) definition of common

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

Error running 'make buildworld' on FBSD 4.9 RC1(i386) source (see below); error replicated twice.....could this simply be due to a corruption of the downloaded ISO file? The softlink created before the initial error message appears to have been created OK, so not sure where the error is being generated. ***************************************************************** ===>

Dear r-help users, I have just downloaded the package vegan and I have problems accessing the data to go through the examples in the tutorial. I can see the data when I type "data()" but I am told that the data doesn't exist when I type the name of one of the variables e.g.: > varespec Error: object 'varespec' not found I suspect this could be a way I have my

I am using rw1001 on Windows 98. I have a package that involves both c and fortran code, which compiled successfully under cygnus b20.1 with Mummit Kahn''s port of gcc 2.95.2. I have upgraded to the new net release of cygwin (version 1.1, including the recent cygwin package upgrade to 1.1.1). Now when the dll for my package is being created, I get the string of errors like: [...] gcc

Dear Forum my machine runs Ubuntu 9.04. I am trying to install Biomart, what I realize is that something is missing and it can't install XML, RCurl but I don't know what more to do, I looked in previous posts but I did not find infoprmation that helped. Thanks Andreia biocLite("biomaRt") Running biocinstall version 2.3.14 with R version 2.8.1 Your version of R requires version

Hello folks I am attempting to install R on a series of Apple G5 machines which are running Yellow Dog Linux 6.0. Has anyone had success with this, and is there something I should be doing which I am not? Upon configure, I receive the error message: checking whether mixed C/Fortran code can be run... configure: WARNING: cannot run mixed C/Fortran code configure: error: Maybe check LDFLAGS

Thanks for your help. I loaded XFree86-devel-3.3.3.1-3.i386.rpm from my OpenLinux CD and as you indicate this solved by X11 include file problem. I then encountered the linking same problem as you describe below. The error message is saying that the compiler can't find the libg2c library, which is its runtime library. Apparently the g77 supplied by Caldera is missing this important piece.

hello bug fixers i think this bug is probably mentioned before but i couldn't find the answer to it on google. i have to build R from the source files ( on a mac os x system ) because i need the python R interface too work. for this too happen r needs to be configured in the following way ./configure --enable-R-shlib when i do this on the newest package i get already some problems but these

Greetings on A.N. Kolmogorov's 100th birthday: I am sure that this is a resolved problem, certainly it has been raised in R help several times before, but I can't seem to find the right clue. I've recently upgraded a G4 to OS 10.2.5 and I thought I would have another go at installing R from source, after failing to accomplish this in 10.1. So with 1.7.0 from CRAN configure seems to

Hi, My previous message is appended: I'm still struggling with building on AIX. I updated my config.site to follow the suggestions from R-admin: MAIN_LDFLAGS=-Wl,brtl SHLIB_LDFLAGS=-Wl,-G This led to an error during configure: checking whether mixed C/Fortran code can be run... configure: WARNING: cannot run mixed C/Fortan code configure: error: Maybe check LDFLAGS for paths to Fortran

I am trying to install R on Linux (Redhat 4). But 'yum' does not seem to work... thanks for your help/hints/suggestions in advance! ------------ $ sudo cat /proc/version Linux version 2.6.34.6-54.24.amzn1.i686 (mockbuild at build-31003.build) (gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)) #1 SMP Fri Sep 17 23:13:59 UTC 2010 $ sudo yum install

Hi, there I'm totally new to this. I used to use SPLUS, but think maybe useful to try R at home. But seems it doesn't like me. I got error message says ld: cannot open -lg2c: No such file or directory My OS is openlinux 2.3. I use egcs-2.91.66. I searched under /lib/egcs-2.91.66/ but found no libg2c.a. There's only a libgcc.a. Thought maybe g77 people changed

I have just installed the version of R for Linux Enterprise Server AS. When R is launched, I receive the following error message: R: error while loading shared libraries: libg2c.so.o cannot open shared object file: no such file or directory I have added the path to the library above to the /usr/etc/ld.so.conf file and then run ldconfig -v. The listing then shows that the libg2c.so.o is