similar to: BioC Advanced Course Jan 10th-12th (Space Still Available)

[BioC] ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14 We will present a short course on using Bioconductor, primarily aimed at analyzing microarray data, over 2 1/2 days in April. The course will be a mix of lectures and practical labs. Instructors: Robert Gentleman, Seth Falcon, Martin Morgan, and Nolwenn Le Meur Topics: Introduction to R Preprocessing of

promptClass fails to identify methods associated with the class. Here is a fix: Index: promptClass.R =================================================================== --- promptClass.R (revision 41719) +++ promptClass.R (working copy) @@ -165,7 +165,7 @@ if (nmeths > 0) { .meths.body <- " \\describe{" for (i in 1:nmeths) { - .sigmat

Spots are still available for an advanced R programming course to be held Jan 18-20 in Seattle. Instructors: Robert Gentleman Seth Falcon Topics: Lexical scope Vectorization S3 and S4 OOP R packages Database connectivity Interfacing to C via .C and .Call Details: January 18-20, 2006 Fred Hutchinson Cancer Research Center Seattle, WA, USA

Dear developers, has anyone experienced the problem described below? Is it a bug in handling interrupts in R? Best, Oleg -------- Original Message -------- Subject: Re: [BioC] 'recursive default argument' error in GOENTREZID2GO From: Diego Diez <diez at kuicr.kyoto-u.ac.jp> ...steps that use to reach me to that point. It happens with any environment, or at least annotation

"Gerard Tromp" <gerard.tromp at sanger.med.wayne.edu> writes: > Greetings, > > this is a follow-up to the mailing below. Seth Falcon replied and indicated > that he and several others were unable to replicate the problem. > Specifically he requested: > > ============ > We are not able to reproduce this issue. If you reinstall the > annotation packages

XSolutions Corp (www.xlsolutions-corp.com) is proud to announce our November, 2005 "Advanced R/Splus programming" in Seattle www.xlsolutions-corp.com/Radv.htm ********* Seattle ------------------------ November 10th-11th, 2005 Ask for group discount and reserve your seat Now (payment due after the class) Email Sue Turner: sue at xlsolutions-corp.com Course Outline: - Overview of

Again i have problem in locating the package for clique-graphs I tried with BioConductor under Browse for packages, it doesn't work atall. Kindly guid me Thanks JJ On 8/23/06, Seth Falcon <sfalcon@fhcrc.org> wrote: > > "j.joshua thomas" <researchjj@gmail.com> writes: > > > Dear Robert, > > > > Thanks for your time. > > I have

Dear R users & developers, Seth Falcon and Martin Morgan are teaching Advanced R Programming and Bioconductor 30 March - 1 April 2007 at the Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. This two-day course focuses on programming skills required to develop software for statistical analysis of high-throughput genomic data using R and Bioconductor. Lectures and practical sessions

The warnings from make.packages.html() on the Apple Mac OS X platform can be dealt with as follows: ------------------------------------------------ (1) make.packages.html() uses the function tempdir() and attempts to create a temporary directory in the default location /tmp/ which fails due to the /tmp directory architecture on the Mac. I set up a .Renviron file in my user account

On Wed, Aug 13, 2008 at 6:56 AM, Laurent Gautier <lgautier@gmail.com> wrote: > There is a chance that further changes in the handling of plotting > devices event appear; > I think that there is an ongoing effort to bring new features for R-2.8. > > What about bumping that to r-devel ? (Sorry if you already did and I missed > it). > The solution you came up with could be

I have just finished a graduate introductory R & BioC class, and found them very interesting. At this moment, I am not doing any R & BioC related-work, which might end up with "use it or lose it". My plan is to get into bioinformatics fields shortly after the completion of master's degree in bioinformatics that I am studying. Considering being very new to R & BioC, I

(xposted to bioc-devel and r-devel as I feel it is relevant to both communities) As someone whose body of work is likely to consist mostly of infrastructural packages and research directly in computing I wholeheartedly agree with Kasper's suggestion that we as a community should work to provide and use package citations. I borrow heavily from existing work in terms of both concept and

[CC:ing package maintainer of 'impute' package and crossposting to r-devel and bioc-devel because this affects both audiences] Hi, the 'impute' package is published both on CRAN and Bioconductor; http://cran.r-project.org/web/packages/impute/ http://bioconductor.org/packages/2.3/bioc/html/impute.html The one on CRAN is v1.0-5, and the one on BioC is v1.14.0. The two

Or maybe the "right" concept is that "numeric" is a virtual class with 3 subclasses: "complex", "double", and "integer". Anyway it's probably too late for implementing the "right" concept so it doesn't really matter. Thanks Martin for offering to fix the as(1L, "numeric") bug. Very much appreciated. I guess that means

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

On 03/27/2014 02:13 AM, Ulrich Bodenhofer wrote: > I fully agree, Michael, that this would be a great thing to have! I have > often wondered why R and the standard packages are still sticking so > much to the old-style S3 flavor though S4 is part of standard R. I > acknowledge that backward compatibility is important, but, as far as I > got it, redefining a function or S3 generic as

I'm trying to load an annotation file on a new R installation on a new machine (Win 7 x64, R 2.15.0) Loading this package fails; I've tried re-installing R and BioC from scratch, including all new packages etc, to no avail. Any ideas? > require("hugene10sttranscriptcluster.db") Loading required package: hugene10sttranscriptcluster.db Loading required package: AnnotationDbi

Hi, While running R CMD build on one of the Bioc packages, I'm getting the following error message * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files Can't call method "print" on an undefined value at /home/sfalcon/arch/x86_64/R-2.3/bin/build line 646. The pacakge has CRLF line endings in source files. >

Hi Christian, Chuck (and lists) It seems that the problem may be the strange behaviour of 'unstack' inside a function. See this thread in the R mailing list: http://tolstoy.newcastle.edu.au/R/help/04/03/1160.html Anyway, I got round the problem by using 'aggregate' instead of converting to a list and then tapply to sum values of metric. Probably more efficient as well. Thanks