similar to: update from tar.gz in local directory on Unix/Solaris

Hi, Sorry to bother, but I checked around and did not succed creating a bundle from six existing packages (which are checkable, installable, etc. individually). I carefully followed the procedure given in ch. 1.1.5 Package bundles. However, I am getting hoffmann at fluke:~/R/Sources >R CMD check cwhmisc * checking for working latex ... OK * using log directory

Hi, I am getting masked objects and I think the maintainers of the respective packages (lattice, boot, survival, aml) should agree on how to eliminate th conflicts. Here my start up protocol with the relevant information: -------------- R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.0 (2005-10-06 r35749) [clip] Type 'q()' to quit R. [clip] [Previously

Hi, Since the installation of R-2.3.0 I have the following problems: 1. Startup .First() produces ------------------ Started in /home/woodstock/hoffmann/Projects/RtoZ/Windwurf/R with '~/R/.Rprofile' edited on 2006-04-28, 11:08 During startup - Warning messages: 1: use of NULL environment is deprecated 2: use of NULL environment is deprecated 3: use of NULL environment is

Hi, After some reading and experimentation I found that I cannot solve this problem: 1. I am starting R and check: > system("pwd") /home/woodstock/hoffmacw/R/test > system("echo $HOME") /home/woodstock/hoffmacw > system("echo $R_PROFILE") /home/woodstock/hoffmacw/R > system("ls $R_PROFILE/.Rprofile") /home/woodstock/hoffmacw/R/.Rprofile

Hi there I hope that I am in the right forum. I am working on Win2000 PC connected via Exceed 6.0.1.0 to a SunOS fluke 5.9 Generic_118558-11 sun4u sparc SUNW,Sun-Fire-480R There I am using Mozilla Firefox 1.0.7 as a browser. I am having difficulties viewing .html files. Their first pages are displayed normally, black on white, links in blue. When I scoll down, the pages appear black

Hi, This may belong more to r-develop, but general discussion may be useful (for the how many-th time ?) seq(2,5,-2) seq(5,2,2) both result in Error in seq.default(2, 5, -2) : wrong sign in 'by' argument But often, if not always, mathematicians and programmers want a behaviour e.g. in for loops, where this statement results in an empty statement, that is for (ii in seq(2,5,-2))

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, I am trying to use sub, regexpr on expressions like log(D) ~ log(N)+I(log(N)^2)+log(t) being a model specification. The aim is to produce: "ln D ~ ln N + ln^2 N + ln t" The variable names N, t may change, the number of terms too. I succeded only partially, help on regular expressions is hard to understand for me, examples on my case are rare. The help page on R-help

Hi, In a second try I will ask this list to give me some useful pointers. Linear lists, as described e.g. by N.Wirth in "Algorithms and Data Structures", seem not to be implemented in S/R, although in lisp we have cons, car, cdr. Nevertheless I want to implement an algorithm using such linear lists, porting a trusted program to R (S). I need: (from Modula/Oberon) pSC* = POINTER TO

I am running R-1.3.0 on Solaris 8: Under Solaris I do setenv dendro_us hoffmann echo $dendro_us gives back: hoffmann which is correct. When in R I do: Sys.getenv("dendro_us") I get dendro_us "" which is NOT correct: Inverse effect (taken from help of Sys.getenv) Under R: print(Sys.putenv("R_TEST"="testit", ABC=123)) [1] TRUE TRUE

Hi, I am trying to install ggobi for R under Solaris SunOS 5.5.1 Generic_103640-27 sun4u sparc SUNW,Ultra-Enterprise following the instructions in INSTALL under e) R interface, although I have some modifications in mind: I am planning to keep the sources (untarred and unzipped) in /home/woodstock/hoffmann/R/Sources/Rggobi and I have set setenv GGOBI_ROOT $HOME/R/Sources/Rggobi (with $HOME =

Hi, When installing "nlme" from CRAN on Solaris 5.3.1 by doing install.packages("nlme") I get: [clip] gcc -G -o nlme.so corStruct.o gnls.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o -L/usr/local/lib R data inst /usr/local/lib/R/bin/INSTALL: /bin/perl: not found help /usr/local/lib/R/bin/INSTALL: /usr/local/lib/R/bin/build-help: not found

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

I have the following problem: I measured co2 on 6 paired sites (one grubbed and one non-grubbed fence per site -> grubbing = treatment). These measurements I repeated 15 times over 2 years. So, now my problem is how to analyze these data. I tried the following model: mod1_CO2<-lme(co2~treatment+time,random=~1|site,data=CO2_t1_t15) I think with the random effect I included the paired

Hi everyone, Being new to the crowd of R users I am wondering what the equivalent of attach("/home/bla/hoffmann/R/.RData",2) (S style) is in R. What I want is a split of .RData repositories. One in a central place where I keep functions and interesting stuff important for all work I am doing, an several others which contain stuff of an dividual project only. When I start in a

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

Hi, I want to use "pairs" on a fairly big matrix, say more than 30 columns. R tries to fit this on one page, which results in tiny invidual rectangles, and dots are hard to see. Is there a way to transform the output of pairs in a way that subplots of 10*10, say, rectangles are generated. These subplots should then go to Sweave which is accepting one figure at a time presently.

Dear R-users I want to save a list with characters a point plot and a Venn diagram in a single pdf page. I am successful to do this when I use a character list and two point plots. However when I try to replace the first point plots with my Venn diagram (built with Vennerable package, compute.Venn() and plot.Venn()) the Venn plot will not position at the right place in the pdf. I guess there

Hi there, I am interested in the inner workings of wilcox.test: > wilcox.test function (x, ...) UseMethod("wilcox.test") <environment: namespace:stats> how can I get at the code, if it is R-code? For Methods one should be able to learn what extension to use, but here default or such do not help. Is there a wayplot.default to learn which different versions of