similar to: Compilation failures: mgcv, spatstat, Matrix, cluster

Hi dear all It's the first time for me to install a developmental version of R, I came across following errors, my system is DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS" I downloaded the dev version of R in cran R source, and downloaded the recommended packages by using wget as described in R manual, and run

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

Doing the normal build process [1] for a first time with a R 2.0.0 snapshot -- the Sep 21 version I uploaded to Debian's 'experimental' section two days ago, ended in failure. The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2

I had installed R from source on Fedora Core 3. Then I upgraded to Fedora Core 4, but left R alone. R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o

Hi (and Merry Christmas), I am trying to compile R on an AIX IBM machine using the native C and FORTRAN compilers... and everything goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

Dear R People: I am attempting to install SparseM on R 2.15.0 on a Linux 11.10 system. Here is the output > install.packages("SparseM",depen=TRUE) Installing package(s) into ?/home/erin/R/x86_64-pc-linux-gnu-library/2.15? (as ?lib? is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

I am having trouble installing cluster from R-1.5.0-recommended : R CMD INSTALL *.tar.gz ... g77 -fPIC -g -O2 -c pam.f -o pam.o g77 -fPIC -g -O2 -c spannel.f -o spannel.o g77 -fPIC -g -O2 -c twins.f -o twins.o cp: cannot access *.so ERROR: compilation failed for package 'cluster' [34] /home/com1/gilp/Rlibs/R-1.5.0-recommended : This is with R-1.5.0 on Solaris 5.8 using gcc

Dear all yesterday I got around to install R-1.5.1 on my machine at home which, admittedly, is running a very old version of RedHat Linux. I noticed two things: 1) My pdflatex version is too old to produce the pdf version of the manuals. `./configure' checks whether a recent version of makeinfo is installed and tells you whether you can produce the info version or not. (I was told I

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1

How to Paint Mona Lisa with MS Paint <http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html> Amazing Art work<http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html> http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html --~--~---------~--~----~------------~-------~--~----~ You received this message

Dear All, I have problem installing the 'kinship' package. I used the 'install.packages' from R command line and had no problem installing other packages before. Here is what I get: * Installing *source* package 'kinship' ... ** libs gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include -fno-common -g -O2 -c agfit6b.c -o agfit6b.o

Hello all, I what to print the banner plot that is output from the mona method in the cluster package but the problem is I dont want to print all that red ink. Here is an example: data(animals) ma <- mona(animals) ma ## Plot similar to Figure 10 in Struyf et al (1996) plot(ma) I can change the bar color by using the argument col=c(0,0) - plot(ma,col=c(0,0)) - but then the variable labels also

Hi! I am trying to calculate a dissimilarity matrix using daisy. The matrix vectver is binary as i test with: > levels(as.factor(vectver)) [1] "0" "1" But the call to daisy gives me the following error message.: > dfl1 <- daisy(vectver, type = list(asymm = c(1:length(vectver[,1])))) Error in daisy(vectver, type = list(asymm = c(1:length(vectver[, 1])))) : at least

Hi there, I'm doing some clustering analysis and try to find all the algorithms related to clustering in R. Here is the list of the algorithms I found. But I'm not sure if It's the complete list. Could you please check it and see if there're other ones? Thank you very much! P.S.: List of the algorithms related to clustering: (1) Hierarchical methods hclust

Hi, I'm wanting to call R from Perl via the RSPerl package. However I cannot seem to install it on my Macbook (OS X Tiger - R 2.6 - Perl 5.8.6). I try to install the source downloaded from the sigmahat website - but it seems to fail - when I search my system for R.pm - I can't find it? Something looks to be going wrong with the make bits? Cheers David M ---- $ R CMD INSTALL

Hi, I am having trouble compiling package gap http://www.hgmp.mrc.ac.uk/~jzhao/r-progs.htm on Tiger. I have installed XcodeTools 2.1. The binary version of gap currently available on CRAN has some bug and is fixed in the latest version. The message I get from R is below. Any help is greatly appreciated. best regards, Kenny Ye tar: Read 1536 bytes from - * Installing *source* package

I'm running R Version 2.1.0 (2005-04-18), ISBN 3-900051-07-0 on Machine Model: Power Mac G5 CPU Type: PowerPC 970 (2.2) Number Of CPUs: 2 CPU Speed: 2 GHz L2 Cache (per CPU): 512 KB Memory: 2 GB with software: System Version: Mac OS X 10.3.9 (7W98) Kernel Version: Darwin 7.9.0 Here is what happened when I tried to update the "foreign" package (similar

Dear R-users, If I would like to track the date when an R-object (specifically an R- function) was modified, how can I achieve that? Furthermore, how can I sort these objects based on date modified? Your help is greatly appreciated All the best Mona -- ***************************************************** *Dr. Mona Kanaan * *Department of Epidemiology

Oracle is finally up and running on RH 7.3 now. I will try to summarize the pitfalls to avoid here for future reference. 1> Make sure you have the Pro C/C++ drivers in Oracle client installed. This can be verified by looking for the existence of the proc directory in $ORACLE_HOME. Existence of proc means it worked 2> Put the following in the .bashrc script in root export