similar to: Rd.sty error

Hi all, I'm writing a vignette for my package, and I would like to include some of the package help files in there as well. Is there an easy way of doing so? I tried using R CMD Rdconv to generate latex files from .Rd files but I am not sure how to include these into a .Rnw file (ie the vignette source). The resulting file from Rdconv do not readily compile using latex ... The other option I

Hi all, I've got a basic question regarding package documentation and rd.sty. I wrote my first own package, and now I would like to place the documentation into the appendix of another LaTex document. Seemingly I cannot simply \usepackage{Rd}, as this will modify the page-settings of my document. Is there a minimum style file which will just define the environments and commands needed for

Is there a package in R that handles general linear (in-)equality + box constrained optimization? If it is not there, could anyone advise me which way to go? And/or point me to packages that solve these problems partially? best, ingmar -- Ingmar Visser Department of Psychology, University of Amsterdam Roetersstraat 15, 1018 WB Amsterdam The Netherlands http://users.fmg.uva.nl/ivisser/ tel:

Hi All, Does someone have an idea of how to cleverly convert a categorical timeseries into a transition matrix? Ie, I have something like: x<- c(1,1,2,1,1,2,2,2,1,2), And I want a matrix with counts and/or probabilities: > tr <- matrix(c(2,3,2,2),2,2) > tr [,1] [,2] [1,] 2 2 [2,] 3 2 Meaning that there are two transitions from 1 to 1, two from 1 to 2, three from 2 to 1

Several people have given great advice on how to successfully use X11 on Mac to so we can use the dvi previewer to view latex() output from Hmisc. Now after a version upgrade of X11 and X11sdk we are getting lots of crashes. I noticed a Mac dvi previewer with an executable stored as /Applications/TeX/TeXShop.app/Contents/MacOS/TeXShop Can we bypass X11 problems and point Hmisc to this

Hi Tom, I am not entirely sure what the problem, you haven't been very specific. If you want general linear constraints on your parameters, ie linear combinations of parameters summing to some value, constrOptim may be of help. hth, ingmar Ingmar Visser Developmental Processes Research Group Department of Psychology University of Amsterdam http://users.fmg.uva.nl/ivisser/ -----Original

In Sweave, if the locale is set to C, non-ASCII characters are not handled nicely even if I declare the encoding of the file to be "UTF-8". I'm trying to find a workaround for this, because I'm using Sweave from within TeXShop. TeXShop runs its typesetting engines in the C locale, and non-ascii characters are messed up. Is there a way to declare that I am in a

Dear R-helpers, I'm trying to transfer a loop from R code to C to improve performance using the .Call interface. However, I ran into problems before even getting started, and I hope (fear) I'm missing something completely obvious here. I use the following C function (passing an integer to the C function and printing it): #include <R.h> #include <Rinternals.h> SEXP

Dear All, When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors: m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking for glib-config... no checking how to run the C preprocessor...

Hello everyone. I am in the process of writing a book in Latex with Texshop, on Mac. This book contains a lot of R code, hence the need to use Sweave. I was able to compile Rnw files, and to sync back and forth from the pdf to the source Rnw. My problem now is that the book is divided in Chapters, and every chapter is in its own Rnw file. I can compile them from the main one (book.Rnw) using the

Dear R help: I am trying to use paste(), within an ifelse() statement to insert latex commands into an object that has been created using xtable(). I cannot make the strings behave as I would like, the '\t' is creating a tab, the usual method of '\\t' is not working either - nor is any series of backslashes. The xtable object, I think, automatically alters the strings. How

Hi, I am using R and latex for generating report. I need R result to be in bold face. For instance. x<-c(1,0,2,4) I need to print its output in bold face. x *1 2 3 4* I attempted to use textbf{} but can not write R output inside it. How can i implement it. Thanks in advance. Regards -- View this message in context:

Dear R-Devel subscriber, I encountered the following problem for tex-formatted table with xtable(). Suppose I do want the following matrix as a table in LaTeX: library(xtable) a11 <- "\\color{green}\\textbf{big green}" a21 <- "\\color{red}\\textbf{big red}" a12 <- "\\color{green}green" a22 <- "\\color{red}red" A <- matrix(c(a11, a21, a12,

Dear community, I had been looking for an easy way to produce latex tables from R output. xtable() and the package apsrtable produce good outputs but they are not exactly what I was looking for. I wrote this code that generates regression tables from multiple R linear models. I want to share it because it might be useful for someone else, and because I would appreciate comments on how to

Hi, When running R CMD check I'm getting a number of errors that I don't quite follow and don't know where to start looking for an answer, any hints appreciated. R CMD check trunk * checking for working latex ... OK * using log directory '/Users/ivisser/Documents/projects/ depmixProject/depmixNew/rforge/depmix/trunk.Rcheck' * using R version 2.6.2 (2008-02-08) * checking

Hola, buenas tardes: Necesitaba un poco de socorro con xtable, si fuese posible. Mi problema es que quiero 'formatear' específicamente algunas celdas de una tabla generada con xtable y no soy capaz. Detallo el problema de ejemplo: vv<-rbind(c(1,1,0,1),c(0,0,1,1)) vv[2,3]<-<-paste("\\textbf{",vv[2,3],"}",sep="") xtable(vv) > xtable(vv) % latex

As some of you will be aware, TeXLive 2009 was released last month having blocked updates on earlier versions since May. This has lead to a flood of updates of LaTeX packages, as a result of which the PDF manuals of R 2.10.0 and earlier will no longer build, for two separate reasons. For MiKTeX users: at least version 2.8 (the current one) has the same updates (a week or so later) and has

If I use latex with describe: (faithful is the Old faithful data) latex(describe(faithful),file="describe.tex") then the first few lines of describe.tex are \begin{spacing}{0.7} \begin{center} \bf faithful \\ 2 Variables~~~~~ 272 ~Observations \end{center} I have two problems. First, I don't know what package the environment "spacing" comes from. (There is also a

Hi All -- I'm not sure this is the natural place for this question, but this list is the place with the best Sweave-TeXShop-sync discussion so far. My problem is that sync+Sweave+TeXShop works sometimes and not others, and it's not consistent. The failure, in which sync from PDF opens the .tex file instead of the .Rnw file, always comes after a code chunk. If I start from a simple

Dear R-helpers & Friedrich Leisch, I'm trying to fit a mixture of regression models on attached data set by doing the following: agl <- read.table("agl.txt") mod1 <- flexmix(resp~gng+csc|Subject,data=agl, model=FLXglm(family="binomial"),k=2) The result is a (varying) number of the following warnings: Warning messages: 1: non-integer #successes in a