similar to: building a package under windows

Hi , I'm currently trying to make available a few fortran subroutines and R functions (which make interface to these subroutines), as an R package. I'm doing it under linux with R 1.9.0 (but hope to do it for windows too). I have trouble for loading my fortran code. Here are the steps involved : 1) In R: # Create tree for package

Hi, here are a couple of strange things happening with R.2.2.0 compiled under Mandrake-10.1 At the begining of the story I have segmentation fault using package RandomFields in conjuction with some Fortran code of mine loaded with dyn.load. One of my fortran programs contains a subroutine named fstat Trying to trace , I simplified the sequence as much as possible and I end up with the the

I am getting the above warning following loading of Geneland 3.1.5 on unix , while a simple plot sends output to the pdf file ( see attached code) no output results from Geneland functions, resulting in empty pdf files > library (Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package 'spam' is loaded. Spam version

I am receiving the above error ( full r session output below) the script runs OK in windows. and "genotypes" and "ploidy" are both correct arguments any suggestions would be most welcome Nevil Amos MERG/ACB Monash University School of Biological Sciences > library(Geneland) Loading required package: RandomFields Loading required package: fields Loading required

Hi all, I'm working out some Fortran code for which I want to compute the Choleski decomposition of a covariance matrix in Fortran. I tried to do it by two methods : 1) Calling the lapack function DPOTRF. I can see the source code and check that my call is correct, but it does not compile with: system("R CMD SHLIB ~/main.f") dyn.load("~/main.so") I get: Error in

Hi, I have some trouble with the result of a fortran function calling the R binomial RNG: The C function rbinom is wrapped as in the file attached. My main fortran program starts as call rndstart() and ends as call rndend() I happen to call the binomial RNG within a loop as b = ggrbinom(1.d0,0.5d0) write(*,*) 'b=',b In certain cases, after a few iterations in the loop, b get

I do the these passages: library(Geneland) set.seed(1) data <- simdata(nindiv=200, coord.lim=c(0,1,0,1) , number.nuclei=5 , allele.numbers=rep(10,20), IBD=FALSE, npop=2, give.tess.grid=FALSE) geno <- data$genotypes coord <- t(data$coord.indiv) path.mcmc <-

After upgrading from mandrake 10.1 to mandriva 10.2 I can't build shared archive with R 2.2.0 [guillot at laplace src]$ R CMD SHLIB main.f sub.f wrapper.c gcc -shared -L/usr/local/lib -o main.so main.o sub.o wrapper.o -lg2c -lm -lgcc_s /usr//bin/ld: cannot find -lg2c collect2: ld returned 1 exit status make: *** [main.so] Erreur 1 I guess the information in

Hello, anybody know the procedure to plot the geneland result in a map? thank you ********************************************************** Vincenzo Landi Post Doctorate student Animal genomic and breeding cell:0039/3395388713 Fax. 075-5857122 [[alternative HTML version deleted]]

Hi, here are a couple of strange things happening with R.2.2.0 compiled under Mandrake-10.1 At the begining of the story I have segmentation fault using package RandomFields in conjuction with some Fortran code of mine loaded with dyn.load. One of my fortran programs contains a subroutine named fstat Trying to trace , I simplified the sequence as much as possible and I end up with the the

I am trying to format data for the Geneland package I need to write a series of paired numbers and paired "000" to a plain ascii file without surrounding the numerals with quotes, the original data is in a matrix formatted paired strings, and written to file using write.table(x,"output filename",col.names=F,row.names=F) thus "77 79" "132 132" "000

Dear list, I apologies first for my English, hope you will understand well my question. I am working on 1/2 hour piezometric data, time unit is second. They present daily oscillation when using the spectrum() function. What I am really interested in, is to find the amplitude corresponding to this oscillation. I work with a college using Matlab, and although we apply the same methodology, our

I would like to call C routines from Fortran under linux as suggested in section 5.6 of the "Writing R extensions" documentation. I'm familiar with Fortran but not with C. I understand the example provided in Fortran: subroutine testit() double precision normrnd, x call rndstart() x = normrnd() call dblepr("X was", 5, x, 1) call rndend() end but I don't understand

I am trying to use the function 'filter.NA=TRUE' in Geneland. The function appears to be set on TRUE by default, as it appears as TRUE in the 'parameter.txt' file output and hence I do not need to enter the function per se (as it is an 'Unused argument otherwise') . Hence all my missing data (individuals that I have not yet scored at that specific loci) are scored as

Hi all, I would like to multithread that script, to detect structure from multilocus genetic data : >library(Geneland) > >geno = read.table("cot966gen_test.txt") #the file is show after >MCMC(geno.dip.codom = geno, varnpop=T, npopmax=20, spatial = F, nit=100000, thinnin=100, path.mcmc="./") >PostProcessChain(path.mcmc="./", nxdom=100, nydom=100,

I would like to call C routines from Fortran as suggested in section 5.6 of the "Writing R extensions" documentation. I'm familiar with Fortran but not with C. I understand the example provided in Fortran: subroutine testit() double precision normrnd, x call rndstart() x = normrnd() call dblepr("X was", 5, x, 1) call rndend() end but I don't understand the purpose

Hi, For the first time I have a strange behaviour when checking a package before 'packaging' the code. Looks like a file cannot be read. rcmd check pgirmess * using log directory 'U:/Documents and Settings/pgiraudo/Mes documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session

I'm sure that this question gets asked frequently, but a quick perusal of the list archives shows that it hasn't been asked in a least a month or so, so pardon any repetition. What is the current state of asterisk on linux 2.6? I ask, because I spent yesterday giving it a whirl, and everything seems to go just fine till the very last minute. Zaptel, libpri and asterisk compile just

Dear all I'm developing a grafical interface for Geneland that is presently one of the R packages available. My first question is about refreshing the interface while running a very long process. run<-function(){ ? ? ? ? tttry <- tktoplevel() ? ? ? ? tkwm.geometry(tttry, "+200+200") ? ? ? ? tkwm.title(tttry,"wait") ? ? ? ?

Having not much success with my previous question I try to reformulate it: I'm simulating a Markow chain in Fortran interfaced with R. Each loop of my Fortran calls various functions of the R RNG through the wrapper given below. In a run of 100 iterations of the Markov kernel, after 20 iterations, the RNG seems like frozen. For example, the first call to the RNG in my loop is: