similar to: R crashes while running RandomForest

I checked GlmmML package. However, it can only do binomial and poisson distribution. How about others such as gamma or neg binomial? Thank you so much! wensui

Right now, I am using SAS and S+/R. As a new year resolution, I am planning to learn a scripting language. from statisticians' point of view, which scripting language is worth to learn, perl, python, or any other recommendation? (Most likely, I will be learning it in windows.) Since I am not in research, I will prefer one widely used in industry and related to statistical work. if you

I remember in one slide of Prof. Ripley's presentation overhead, he said the most popular data analysis software is excel. So is there any resource or tutorial on this topic? Thank you so much!

Good morning, dear listers I am wondering if you could recommend a good tutorial / book for r scripting. thank you so much in advance! WenSui Liu Credit Risk Manager, 53 Bancorp wensui.liu at 53.com 513-295-4370

Dear Lister, plot() is using the data range as the default limits of yaxis. Is there any way I can change the limits? I just look at the help of plot() and par() and couldn't find answers. Thanks. -- WenSui Liu (http://spaces.msn.com/statcompute/blog) Senior Decision Support Analyst Health Policy and Clinical Effectiveness Cincinnati Children Hospital Medical Center

I really have headache when I do google search for information about "R". Any tricks or tips? thx.

Dear Lister, If I have a list of number, say x<-c(0.1, 0.5, 0.6...), how to use a for() to loop through each number in x one by one? Thank you so much! wensui [[alternative HTML version deleted]]

I am attempting to use randomForests to look for interesting genes in microarray data with 216genes, 2 classes and 52 samples. My data.frame is 52x217 with the last column, V217 being the class(1 or 2). When I try lung.rf <- randomForest(V217 ~ ., data=tlSA216cda, importance= TRUE, proximity = TRUE) the GUI crashes. I am running R-1.6.2 under windo$e98, and most

Sometimes, it is too costly to read the whole data file into R. I am looking for solution in scan() and read.Lines() but don't they work. Thank you so much! -- ============================== WenSui Liu Acquisition Risk, Chase Blog : statcompute.spaces.live.com Tough Times Never Last. But Tough People Do. - Robert Schuller

Has anyone sucessfully used the maxnodes feature in randomForest? I tried setting it, but when it is non-NULL I always get back a forest in which all trees have size 1. I am using a continuous response (regression). Any help would be appreciated. Thanks. [[alternative HTML version deleted]]

All, I'm trying to set up a function which calls the partialPlot function but am getting an error that I can't seem to solve. Here's a simplified version of the function and error... > pplot <- function(rf,pred.var){partialPlot(x=rf,pred.data=acoust,x.var=pred.var)} > > attach(acoust) > acoust.rf <-

Dear Listers, Is there any good paper about how to use R together with VB? Thank you so much! -- WenSui Liu (http://statcompute.blogspot.com) Senior Decision Support Analyst Cincinnati Children Hospital Medical Center [[alternative HTML version deleted]]

Dear Listers, I've been a big fan of R since graduate school. After working in the industry for years, I haven't had many opportunities to use R and am mainly using SAS. However, I am still forcing myself really hard to stay close to R by reading R-help and books and writing R code by myself for fun. But by and by, I start realizing I have hard time to keep up with R and am afraid that I

i am just wondering if there is an effective way to include other external codes into the program. thanks. [[alternative HTML version deleted]]

Dear R community, I have a dataframe with say 100 different variables. I wish to regress variable 1 separately on every other variable (2-100) in a linear regression using lm. There must be an easy way to do this without loops, but I have difficulties figuring this out... Can you please help? Thank you and best regards, Georg. ***************************************** Georg Ehret Johns Hopkins

Hi R-experts, I have data from four conditions of an experiment. I tried to create four subsets of the data with read.table, for example, read.table("Experiment.csv",subset=(condition=="1")) . I found a similar post in the archive, but the answer to that post was no. Any new ideas about reading subsets of data with read.table? Thanks! Feng [[alternative HTML version

Dear All, I finally have chance to have R install on our unix server. However, the system admin asked me if I prefer command-line or gui interface. I have experience with R on linux before but never use R on unix. Here are my questions that I need you guys help. 1) is there a good gui for R/unix like we do for windows and mac? 2) if the answer for 1) is yes, which one is better interms of

Dear list, I am trying to do a benchmark study for my case study. It is a regression problem. Among other models I use randomForest. Using the following code the result is around 0.628, and this make sense comparing with other methods. The Theil function implements Theil's U statistic. I do not present the definition of some variables because it is not important to understand my problem.

Dear R Group I had an observation that in some cases, when I use the randomForest model to create partialPlot in R using the package "randomForest" the y-axis displays values that are more than -1! It is a classification problem that i was trying to address. Any insights as to how the y axis can display value more than -1 for some variables? Am i missing something! Thanks Regards

RF trains fine with X, but fails on prediction > library(randomForest) > chirps <- c(20,16.0,19.8,18.4,17.1,15.5,14.7,17.1,15.4,16.2,15,17.2,16,17,14.1) > temp <- c(88.6,71.6,93.3,84.3,80.6,75.2,69.7,82,69.4,83.3,78.6,82.6,80.6,83.5,76 .3) > X <- cbind(1,chirps) > rf <- randomForest(X, temp) > yp <- predict(rf, X) Error in predict.randomForest(rf, X) : subscript