similar to: Strange behavior of is.na() on lists

Hi there, i've got some errors in my log files # dovecot --version 2.2.9 Here the Log's:

Hi, I have been trying to find a solution to this issue, but have not been able to so ! I am trying to use sapply on the function getSYMBOL, an extract from the list is: > test.goP[13:14] $`GO:0000050` IEA IEA IEA IEA TAS TAS TAS IEA "5270753" "5720725" "1690128" "4850681" "110433" "2640544"

Hello, I've found this in the logfile: Sep 7 23:16:55 s-imap3 dovecot: dsync-local(timss.iea-dpc.de): Error: /vmail/iea-dpc.de/timss/Maildir/.Countries.USA/dovecot.index.log: Transaction log changed unexpectedly, can't get modseq Can anyone tell me what is worng? Regards Andreas -- IEA Data Processing and Research Center Andreas Fineske Information and Communication Technology Services

our group at Duke is currently attempting to connect two data sets fed through a web-based system, one containing research questions (i.e., variables positioned with certain roles) and a database of statistical methods. this connection is done informally in a number of R packages and related software such as Rcmdr, R4calc, and Rkward where a variable of a certain type is matched to a certain

Dear Jean-Marc: Would you please send Thierry an ontology mapping table specification for speex according to the format he links to at the end of his message below? Thank you. On Mon, Oct 11, 2010 at 9:54 AM, Thierry MICHEL <tmichel at w3.org> wrote: > Dear James, > > In your latest email to the MAWG response to your comment, you seem to > disagree with the MAWG proposal. >

Jonathan Gheyssens M.Sc Economie Appliqu?e IEA - HEC Montr?al jonathan.gheyssens at hec.ca 514-581-8009 514-678-5231

Dear all, I have an ontology which I would like to load in R to then compute the minimum distance between elements. Since this ontology is not only DAG, the problem is non trivial and therefore decided to use R with the powerful e1071 library (allShortestPaths) to do that. That method requires to provide a distance matrix between the various objects. My ontology contains 32768 objects and

Hi, I have a list of IPI gene IDs. I want to find out whether there is a package which can map the gene ontology to these IPIs, and plot the pie chart to demonstrate the molecular function distributions. The input is like the following gene IPI IDs: IPI:IPI00008860.1|SWISS-PROT:Q9BXJ4-1|TREMBL:Q542Y2|ENSEMBL:ENSP00000231338;EN

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Hello! I don't know if there is some R-package able to associate ontology to a long list of GeneBank Name (a txt-tab file or an XML file), i.e. I would as output a formatted file with 4 columns (1:GeneBank Name 2,3,4:ontology). I know that I have to perform a mapping of genes, I got a look on AnnBuilder pkg, but I 've not idea from where to start. Some suggestion? Thanks in advance!

Using imapsync I changed many ACLs on many accounts simultaneously in four concurrent IMAP-sessions. I started with an empty file "shared-mailboxes". But after the sync the file "shared-mailboxes" has been crashed. I found broken lines and I'm missing some entrys. Is it possible that there's no filelocking on that file? I used the ext3 filesystem. That's

Are there any R packages to import and use Web Ontology Language (OWL) ontologies (represented in OWL/RDF or other form)? Thanks, -s [[alternative HTML version deleted]]

Hi, i want to parse a XML-File. I made some Tutorial but with my special Format it don't work. An Example of my format: <?xml version="1.0" encoding="ISO-8859-1"?> <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml

Dear cateGOry experts, hyperGTest documentation states that YEAST cannot be used as 'annotation' when evaluating gene ontology representation status for a given set of 'geneIds'. Because I am using a custom print I believe I need to create my own data package to use as the annotation file for 'annotation'. Can someone please describe how to make a data package that will

Hi: I have clustered microarray gene expression data and trying to map between microarray probe, gene, pathway, gene ontology, and homology for a set of (affy) microarray probes. Is there any package in R which facilitates this? I am looking at bioconductor, but till now could not find a solution. A link to some worked example would be appreciated. Thanks and regards. John [[alternative HTML

On Mon, Nov 17, 2008 at 11:41 AM, Ralph Giles <ralph.giles at artifex.com> wrote: > On Sun, Nov 16, 2008 at 3:22 PM, Silvia Pfeiffer > <silviapfeiffer1 at gmail.com> wrote: > >> Plus, the W3C is currently >> investigating a new ontology for video/audio metadata. This may be a >> good extension for vorbiscomment once finished. > > Ooh, can you say

Unfortunately I was unable to build s390 binaries since multilib was dropped in Fedora 24 on s390x. Going from the source of the 'file' command it seems as if it prints "32-bit" (the architecture is really 31 bit). --- generator/actions.ml | 12 ++++++++++++ src/filearch.c | 10 ++++++++++ test-data/Makefile.am | 2 ++

Full_Name: emiel ver loren Version: 2.2.0 OS: Windows XP Submission from: (NULL) (145.117.31.248) Dear R-community and developers, I have been trying to read in a tab delimeted file where the column names and the row names are of the form "GO:0000051" (gene ontology IDs). When using: > gomat<-read.table("test.txt") > colnames(gomat)[1] [1] "GO.0000051"

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[ I''m still hoping for some help with this, folks... -r ] As part of the Arti (http://mephisto-ar.cfcl.com) effort, I''m looking into creating a database to store information on entities and relationships found in Ruby and Rails, as: Method M1 is defined for Class C1 in File F1. Method M1 of Class C1 is used by Method M2 in File F2. Disregarding (for the moment)