similar to: Running scripts automatically from Rgui (Windows)

Dear all, I'm trying to install lme4 (after having installed R 2.4.0 from source, and having installed the latest Matrix package). lme4 fails with the following message: pedigree.o definition of _lme4_xSym in section (__DATA,__common) pedigree.o definition of _lme4_ySym in section (__DATA,__common) make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' ** Removing

While trying to install a package, I received this error ** preparing package for lazy loading Error in matchSignature(signature, fdef, where) : more elements in the method signature (2) than in the generic signature (1) A more helpful variant is Error in matchSignature(signature, fdef, where) : more elements in the method signature (2) than in the generic signature (1) for function

Hello R-Team, May you help me to post a 'S4-creating Package Problem'? Thanks already now for supporting. The problem sounds like: Hello R forum, while compiling my R-package these 'Warnings' occur: ... Warnung in matchSignature(signature, fdef, where) : in the method signature for function "plot" no definition for class: "prediction" Warnung in

In my package, I create a new method for plot with the following signature: setMethod("plot", signature(x="marrayNorm", y="formula"), plot.ma) where marrayNorm is a class defined in the marray package. After building and installing my package, I get the following warnings when I load my package (with library(maVis)): Warning messages: 1: In the method signature

With > R.version.string [1] "R version 2.15.0 alpha (2012-03-14 r58748)" trying to trace a method using the 'signature' argument fails rather than enabling the trace: > trace(initialize, signature="ANY") Error in matchSignature(signature, fdef, where) : trying to match a method signature of class ?signature?; expects a list or a character vector --

I'm seeing weird issues in methods initialization, i.e. loading marrayClasses loads Biobase, and when explicitly done, as in library(Biobase) library(marrayClasses) is fine, but when Biobase is loaded via a require statement in marrayClasses' .First.Lib, I end up with: Warning message: In the method signature for function "coerce", class "exprSet" has no

This seemed too advanced for r-help and is related to the recent discussion of character vectors in dataframes. Following Brian Ripley's most excellent advice, we are moving to a world in which character vectors in dataframes are always of class AsIs. The cool way of doing this seemed to be the following: > cat(c("x", "y", "z"), file = "test.txt",

after this setClass("A") setGeneric("bar", function(x, y) standardGeneric("bar")) setMethod(bar, signature(x="A", y="A"), function(x, y) {}) setMethod(bar, signature(x="A", y="ANY"), function(x, y) {}) the method for signature c("A", "A") contains package information > str(getMethod(bar,

Hello, I have a simple class that looks like: setClass("statisticInfo", representation( max = "numeric", min = "numeric", beg = "numeric", current = "numeric", avg = "numeric", obs = "vector"

I am having trouble converting the output from Sweave into a valid PDF file. I have created a simple .Rnw file which will become a full vignette at some point, but during the intermediate testing, I got errors from texi2dvi. This is what I have done. 0) Using a Windows Xp system 1) Created a file called GeneSpring.Rnw 2) Convert this to Tex using Sweave("GeneSpring.Rnw") from within R

Folks: I don't know whether the following is a Windows or R problem, nor whether it is particular to my particular Windows version/setup. So any help would be appreciated. First the problem, then the info. The following code can be cut and pasted into your R session ############################# ### start R ### create a plot on device 2 (which can be determined by dev.cur()) plot(1:10)

Hello to the list Some days ago, I placed a question on this maling-list and received an answer from Martin that I tried to follow. Unfortunately, I am still puzzled by the next step. I spent the whole Week-end in gathering information from the net. Some of them are almost contridtcory and I lack a good document to help me. So my first question would beL Is there a convenient document which

I am constantly running into the problem where I get error messages like "cannot do complex assignments in base namespace". It might have something to do with the fact that R has not started up completely, since I am trying to run some R script using Rterm < Rscript.R. When I perform the same script in a Interactive R session, the R script has no problem with the assignments that it

Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on CRAN for use with R version 2.4.0 or later. Purpose of the packages: The Matrix package provides S4 classes and methods for sparse and dense matrices. The lme4 package provides functions for fitting and assessing linear or generalized linear mixed effects models (also called multilevel models). Like the Matrix package,

Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on CRAN for use with R version 2.4.0 or later. Purpose of the packages: The Matrix package provides S4 classes and methods for sparse and dense matrices. The lme4 package provides functions for fitting and assessing linear or generalized linear mixed effects models (also called multilevel models). Like the Matrix package,

Full_Name: Henrik Bengtsson Version: R v1.4.1 OS: WinMe Submission from: (NULL) (217.208.14.137) Doing the following library(methods) setGeneric("foo", function(x) standardGeneric("foo")) setMethod("foo", "ANY", function(x) cat(x)) fails with Error in while (value[n] == "ANY") n <- n - 1 : missing value where logical needed It

Hello, The vignette concept, which started in Bioconductor, seems to be catching on. They are supported by R CMD build/check and documented in the Writing R Extensions manual. I think vignettes are a fantastic way to introduce new users to a package. However, getting new users to realize that a vignette is available can be challenging. For some time now, we have had a function in Biobase that

Hi friends, I was trying to install RJSONIO in Ubuntu10.04 LTS but unfortunately ends up with following error. trying URL 'http://stat.ethz.ch/CRAN/src/contrib/RJSONIO_0.98-1.tar.gz' Content type 'application/x-gzip' length 1150673 bytes (1.1 Mb) opened URL ================================================== downloaded 1.1 Mb * installing *source* package ‘RJSONIO’ ... Trying to

How can I extend the signature of a generic function, because the following example is unclear for me. setClass("A",representation(data="numeric")); setGeneric("func",function(obj,...){ res <- standardGeneric("func"); res at cal <- match.arg(); return(res); }); func1.A <- function(obj){ print("A"); return(); }

Hello. I am trying my hand at modifying the varFunc class varExp, but I must be missing a step. All I want to do right now is make a working copy of varExp, call it varExp2, and then later change it. coef.varExp2, coef<-.varExp2, and Initialize.varExp2 all seem to work properly after I construct them. I can successfully use the commands: v2 <- varExp2(form = ~age|Sex,fixed =