similar to: TeX error generated by R CMD CHECK

Dear all; Installing the GLMMGibbs package to my Solaris Unix box, I got an compiling error: ars.c:497:10: missing terminating " character ars.c: In function `dump_arse': ars.c:498: error: parse error before "mylesj" ..... The compiling error was reported to the list on Jul 3, 2003. According to Prof. Brain Ripley this is a known problem with the package and gcc 3.3,

I've been having problems building vignettes in bioconductor packages with R-devel. Turns out that Rdevel/share/texmf/hyperref.cfg wants Blue and Red predefined, when only blue and red are defined (as of rsync Rdevel, Sept 10th). This is on a Debian unstable system (Sept 9th version). Might not apply to all other tetex systems. Seems to have bitten the bioconductor build system, though.

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

I getting compilation errors when trying to install GLMMGibbs (see below). I'm running R v 1.7.1 on SuSE Linux 8.2. Has anyone else had this problem? I tried it on a Win2000/R 1.5.1 combination and it worked fine. Any hints are greatly appreciated. Thank you in advance, Damien >install.packages("GLMMGibbs") trying URL `http://cran.r-project.org/src/contrib/PACKAGES'

I have C routines in a collection of files "/homef/jonm/postdocs/GLMM_project/Cprogs/nn/misc.o" "/homef/jonm/postdocs/GLMM_project/Cprogs/nn/random.o" "/homef/jonm/postdocs/GLMM_project/Cprogs/nn/ars.o" ... etc , where the third file includes functions which call functions in the second. In S, the function > gload function() {

Recently, I upgraded MiKTeX to the latest versions, and since then there are problems when I try to build R and/or R packages. I tried to build R 1.9.0 beta and R 1.8.1 patched I am running Windows XP Pro, SP 1 MikTeX version is This is e-TeX, Version 3.141592-2.1 (MiKTeX 2.4) (preloaded format=latex 2004.3.27) fpTeX version is This is e-TeXk, Version 3.141592-2.1 (Web2c 7.5.2) (format=latex

Hi all I know GLMMGibbs is still in beta but has anyone experienced (and solved ;-) this problem? I decided to look at the seeds example but I get a core dump on two intel linux boxes and also a sun workstation. All are running R1.3.0 but different hardware/OS's so I think I've done something wrong > library(GLMMGibbs) > data(seeds) > seeds$plate <- as.factor(1:21) >

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

After configure, make and make check on a linux Suse 7.3 box, I run make dvi and make info with no problems but get a lot of garbage to my screen during make pdf. Is this normal? Is there a bug in this part of the installation? This is part of what I get on the screen: humboldt:/usr/local/R-patched # make pdf make[1]: Entering directory `/usr/local/R-patched/doc' make[2]: Entering

As some of you will be aware, TeXLive 2009 was released last month having blocked updates on earlier versions since May. This has lead to a flood of updates of LaTeX packages, as a result of which the PDF manuals of R 2.10.0 and earlier will no longer build, for two separate reasons. For MiKTeX users: at least version 2.8 (the current one) has the same updates (a week or so later) and has

Hi, This is a follow-up to the problem reported here: https://stat.ethz.ch/pipermail/r-devel/2010-September/058460.html After I updated R-2.12 to 2010-09-13 r52905 on the Bioc build system, some of the packages that have a Makefile in <pkg>/inst/doc still don't build on Windows. For example, 'R\bin\R.exe CMD build adSplit' gives: * checking for file

Greetings- I'm working with data that are multilevel in nature and have a dichotomous outcome variable (presence or absence of an attribute). As far as I can tell from reading archives of the R and S lists, as well as Pinheiro and Bates and Venables and Ripley, - nlme does not have the facility to do what amounts to a mixed-effects logistic regression. - The canonical alternative is

Dear R-users, I wondered if anyone has extended GLMMGibbs to include correlated random effects, and if so, whether they would be willing to let me use their code? Jonathan Myles has no plans to extend glmm in this manner within the foreseeable future. With thanks, Patty -- -------------------------------------------------------------------------------- Assoc Prof Patty Solomon

Dear All, I wonder if there is a way to fit a generalized linear mixed models (for repeated binomial data) via a direct Maximum Likelihood Approach. The "glmm" in the "repeated" package (Lindsey), the "glmmPQL" in the "MASS" package (Ripley) and "glmmGIBBS" (Myle and Calyton) are not using the full maximum likelihood as I understand. The

On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work

Hello, I am trying to use glmm() in library GLMMGibbs, but I don't seem to have the package and it is not listed on CRAN. Is it no longer supported? (I am using R 2.1.1 on Windows.) Many thanks in advance for your help. Regards, Mark The information contained in this e-mail is confidential and...{{dropped}}

Hello, I'm trying to make a poster in Latex using the beamer poster macro (http://www-i6.informatik.rwth-aachen.de/~dreuw/latexbeamerposter.php), and use Sweave to add in R output. This works fine for adding graphics and tables, but if I want to put code in, the file fails to build in Latex. My Rnw file looks like \documentclass[final,hyperref={pdfpagelabels=false}]{beamer}

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Is there a platform-independent way of checking in R whether a given file exists in the user's filespace? (so in a unix system, can you check within R whather, say, /homef/jonm/thisfile exists) Thanks Jonathan Myles -- Dr. Jonathan Myles e-mail:jonathan.myles at mrc-bsu.cam.ac.uk MRC Biostatistics Unit Tel. 01223 330372 Institute of Public Health FAX 01223 330388