Displaying 20 results from an estimated 100 matches similar to: "help: exponential fit?"
2007 May 11
3
A simple question regarding plot of nls objects
Hi,
I was trying to run the example of Indomethacin kinetics from the book:
## From Pinheiro/Bates, Mixed-Effects-Models in S and S-Plus,
## Springer, Second Printing 2001, Section 6.2
library(nlme)
plot(Indometh)
fm1Indom.nls <- nls(conc~SSbiexp(time,A1,lrc1,A2,lrc2), data=Indometh)
summary(fm1Indom.nls)
plot(fm1Indom.nls,Subject~resid(.),abline=0)
## ....
the last plot command gives me the
2013 Apr 23
2
SSbiexp
Hello all!
I have a problem to use a biexponential regression model:
I use this code:
n3<-nls(proc~SSbiexp(cls,a,b,c,d),data=bline) and this is the error message:
Error in nls(y ~ cbind(exp(-exp(lrc1) * x), exp(-exp(lrc2) * x)), data =
xy, :
singular gradient
My data is like this:
structure(list(proc = c(387.177462830167, 508.090511433077,
321.836817656365,
151.226805860727,
2007 Aug 23
0
Lost in substitute: nlsList and nlme with dynamic formula
DeaR
I am trying to use a dynamically create formula with nlsList and nlme, but I
cannot get the environment of the string-generated formal to work similarly
to the manually entered one.
Any idea?
Dieter
#-----
library(nlme)
# Pinheiro/Bates p 280
fm1Indom.lis = nlsList(conc~SSbiexp(time,A1,lrc1,A2,lrc2),
data=Indometh)
nlme(fm1Indom.lis,random=pdDiag(A1+lrc1+A2~1))
# works...
# Simulating
2006 Aug 24
0
syntax for pdDiag (nlme)
At the top of page 283 of Pinheiro and Bates, a covariance structure for
the indomethicin example is specified as
random = pdDiag(A1 + lrc1 + A2 + lrc2 ~ 1)
The argument to pdDiag() looks like a two-sided formula, and I'm struggling
to reconcile this with the syntax described in Ch4 of the book and online.
Further down page 283 the formula is translated into
list(A1 ~ 1, lrc1 ~ 1, A2 ~ 1,
2006 Oct 20
2
Generating start values for nls
Dear R-listers,
I would like to know if there is a way to programmatically generate
parameter start values for the model y~(a*exp(b*x)+c*exp(d*x)) in R.
I've scoured the help files and archives for nls() and similar searches,
and have read Fox 2002 - the best advice has been to make estimates from
a priori knowledge of the data. However, in the Matlab CurveFit tool,
reliable start values are
2001 Dec 03
0
problems with nmle
Following the Indomethicin example in Pinheiro & Bates, chapter 6,
page 277 etc, coming to the following comand:
fm2Indom.nlme <- update( fm1Indom.nlme,
random = pdDiag(A1 + lrc1 + A2 ~ 1) )
debugging nlme gives the following output:
Browse[1]> n
debug: modelResid <- ~eval(model, data.frame(data, getParsNlme(plist,
fmap, rmapRel, bmap, groups, beta, bvec, b, level,
2013 Feb 10
2
exponential model in R
Dear R users,
I don't know how to compute an exponential model like this:
proc=a*exp(b*cls), or proc=a*exp(b*cls)+c*exp(d*cls). Please help me to
solve this problem!
Thank you!
My data is:
row.names proc cls
1 0.5 452.616206 0.5
2 1 255.864021 1.0
3 1.5 150.885316 1.5
4 2 86.289600 2.0
5 2.5 56.321559 2.5
6 3 39.504444 3.0
7 3.5 25.570308 3.5
8 4 5.382726 4.0
--
---
Catalin-Constantin
2012 Aug 14
3
self-starter functions for y = a + b * c^x
Hi
there are some predefined self-start functions, like SSmicmen, SSbiexp,
SSasymp, SSasympOff, SSasympOrig, SSgompertz, SSflp, SSlogis, SSweibull,
Quadratic, Qubic, SSexp (nlrwr)
Btw, do you know graphic examples for this functions?
The SSexpDecay (exponential decay) for y = (y0 - plateau)*exp(-k*x) +
plateau from
2001 Jun 10
0
r-mode (ESS/XEmacs) issue solved
Hi folks,
I was able to track down the problems I had
with xemacs / ESS / cygwin / MS W2000 to the
file "essd-r.el" in the ESS 5.1.18 package.
ESS seems to think, it is running
in a complete Unix environment and
sends the wrong command line option
("--no-readline" instead of "--ess")
to the MS W2000 executable "Rterm.exe".
My temporary patch looks
2009 Apr 09
1
Biexponential Fit
Hi,
I want to do a biexponential Fit, i.e.
y ~ A1*exp(k1*x) + A2*exp(k2*x)
Is this possible? I tried nls() but it stopped with several (different)
errors. I'm using y and x as simple vectors and the formula for nls()
exactly as mentioned above.
Thanks a lot!
Jonas
2012 Aug 23
1
NLS bi exponential Fit
Hi everyone,
I'm trying to perform a bi exponential Fit with the package NLS. the
plinear algorithm seems to be a good choice
see:
p<-3000
q<-1000
a<--0.03
b<--0.02
t<-seq(0:144);t
y<-p*exp(a*t) + q*exp(b*t)+rnorm(t,sd=0.3*(p*
exp(a*t) + q*exp(b*t)))
fittA <- nls(y~cbind(exp(a*t), exp(b*t)),
algorithm="plinear",start=list(a=-.1, b=-0.2), data=list(y=y, t=t),
2001 Jun 08
1
binom.test appropriate?
Hi there,
as part of a 2 x 2 contingency table analysis I would like to estimate
conditional probabilities (success rates) in a Bernoulli
experiment. In particular I want to test a null hypothesis p <= p0
versus the alternative hypothesis p > p0.
As far as I understand the subject, there are UMPU tests for these
types of hypotheses.
Now I know about R's "binom.test" but the
2001 Jun 09
2
r-mode (ESS/XEmacs)
Hello,
please excuse me if this is not the appropriate
mailing list, but I'll give it a try!
I recently switched from using Emacs 20.7.1 to
XEmacs 21.4, both on cygwin / MS W2K.
On Emacs the ESS 5.1.17 was working well, but
now, when calling R from within XEmacs,
it first asks for the working directory,
then says "R process is not running".
The ESS buffer holds the
2008 Apr 30
2
Summary statistics across factor levels
R users,
I intention is to calculate some summary statistics across factor
levels. I know that in Hmisc package there is a summary function which
produces neat summary statistics when using "cross" option. I would
like to produce similar output with N and Missing columns but produce
a data.frame. Is there any built-in function for that?
#example data
install.packages("Hmisc")
2001 Dec 27
3
reshape error in 1.4 (PR#1231)
Full_Name: Kevin Wright
Version: 1.4
OS: Windows 95
Submission from: (NULL) (170.54.59.160)
Note: This was the 1.4 build for Windows that Brian Ripley made available.
The first example in the help for reshape doesn't work for me. When I cut and
paste, this is what happens:
> data(Indometh,package="nls")
> summary(Indometh)
Subject time conc
2001 Jun 09
1
AW: binom.test appropriate?
No,
since I'd like to test
null: p <= p0
alternative: p > p0.
and my understanding is that binom.test tests
null: p = p0 (can only be a "simple" null hypothesis
according to help(binom.test))
alternative: p > p0 (or p < p0 or p != p0).
Thanks, Mirko.
> -----Urspr?ngliche Nachricht-----
> Von: Douglas Bates [mailto:bates at stat.wisc.edu]
>
2008 Nov 14
1
Superimposing y-variables in Lattice formulas
Given a data frame of a categorical variable and two continuous
variables, I would like to display one continuous variable against the
other for each value of the categorical variable, all superimposed on
the same plot. For example:
data(Indometh); str(Indometh)
Classes 'nfnGroupedData', 'nfGroupedData', 'groupedData' and
'data.frame': 66 obs. of 3
2005 Jun 24
9
R demos
Hi All,
I am currently preparing some form of slideshow introducing R and its
capabilities for some colleagues. The thing will be about 30 mins, and
I'd like to have some "pretty pictures" and some "amazing facts" (I'm
trying to sell, obviously :)).
Can I ask if it's possible to easily retrieve a gross figure of the
number of functions in R considering the
2009 Dec 12
4
simple ts.plot question
*Respected Sir,
I have a simple question regarding plots of time series in R.
I have to plot "conc" against "time" **for each individual and display in
the same panel for the in-built dataset "Indometh" in R.
*
***I have six time series, say subject1.ts, subject2.ts, .............,
subject6.ts.
The observations are taken at an interval of 0.25 hr.
All of the series
2006 Jul 24
3
random section of samples based on group membership
Hi all,
I have a matrix of 474 rows (samples) with 565 columns (variables).
each of the 474 samples belong to one of 120 groups, with the
groupings as a column in the above matrix. For example, the group
column would be:
1
1
1
2
2
2
.
.
.
120
120
I want to randomly select one from each group. Not all the groups
have the same number of samples, some have 4, some 3 etc. Is there a
function to