similar to: nlme and "Mixed- Effects Models..." in Windows

Windows98, Emacs20.7, ESS5.1.18 I recently constructing a data.frame "belle" that now does not spew its contents when I type the name on the command line (see errors below). It will only do so if I specify columns. Incidently, plot(belle) displays the pairs plot of all variables. > belle Error in as.data.frame.default(x[[i]], optional = TRUE) : can't coerce array into a

I am running R 1.2.3 with ESS5.1.18 with Windows 98. I am trying to use lsoda in the odesolve apckage and am having problems. Question: The return value of the function of the system of ode's has to be a list that includes first, the ode's and second, "a vector (possibly with a `names' attribute) of global values that are required at each point in `times'." I

How do I get eval( deriv(~F,"x") ) to return ONLY the values of the derivative of F? the default returns values of F(x), AND F'(x) as a ".gradient" attribute, and , after reading everything I have on eval(), deriv(), and attr(), I had absolutely no idea how to get just F'(x) evaluated a x. Many thanks, Henry Dr. M. Henry H. Stevens Postdoctoral Associate Department of

How does one turn a character string back into an object? I would like to take character strings and use them as objects, a process that I think is the reverse of deparse( substitute(X)). E.g., I would like to get the variable names from the fourth object listed with objects(), something like names(objects()[4]), but of course that doesn't work. Thanks Henry Dr. M. Henry H. Stevens

Running R 1.2.3, Windows 98 I checked the archives, and I couldn't find anything pertaining to this: How do I control format (scientific notation versus decimal, e.g.) on tick labels? TIA, Henry Dr. M. Henry H. Stevens Postdoctoral Associate Department of Ecology, Evolution, & Natural Resources 14 College Farm Road Cook College, Rutgers University New Brunswick, NJ 08901-8551 email:

Dear R folks, (Running Windows 98, Pentium II, 128 Mb RAM) I have been using Splus 2000 for about 1.5 years, and have recently begun using R. I love the Open Source philosophy! I may be switching to to Linux soon. My question: How do people most often interact with R? In Splus 2000, I used "Script" windows to write functions. "Script" windows were great because: 1..

Quick question. How important are these? Are the errors recoverable and not a big deal, or are they actually a problem? I see a few of these randomly over the course of the day. Jan 15 10:04:04 gehenna13.rutgers.edu dovecot: IMAP(user): unlink(/rci/nqu/rci/u8/user/dovecot/.such and such maildir/.nfs00000000001e951000002b8d) failed: Device or resource busy Jan 15 10:04:04 gehenna13.rutgers.edu

I'm not sure how useful this is with optimization turned back on, but here it is anyway. This was just a one off that happened last night: Jan 27 20:49:05 gehenna17.rutgers.edu dovecot: IMAP(user): fscking index file /rci/nqu/rci/u2/user/dovecot/.INBOX/dovecot.index Jan 27 20:49:05 gehenna17.rutgers.edu dovecot: IMAP(user): Panic: file mail-transaction-log-view.c: line 108

Hello, I am interested in generating a compact letter display for the results of Tukey HSD tests that contain interaction effects. The 'cld' method in the 'multcomp' package seems only to work for main effects. Does such a thing exist already? Thank you for any thoughts, Josh -- Joshua Caplan, PhD Postdoctoral Associate Department of Ecology, Evolution, and Natural Resources

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Dear R-users, I am trying to develop a function that takes another function as an argument, changes its default values and returns a list of things, among which the initial function with its default arguments changed. An example of what i will like to obtain below: ## initial function myfun <- function(x, a=19, b=21){ return(a * x + b) } ## this is the function i will like to create ##

Hi all, I am have an R script that makes many plots, and I would like to string them into a movie file. To do that I have to save all of my plots as jpegs or gifs. I don't want to go through all of my plots and save them by hand though. Is there a way to automate saving the plots as a gif or a jpeg so I can string them into a movie? Thanks in advance Matt Oliver

I have been trying to write my own user defined function in Rpart.I imitated the anova splitting rule which is given as an example.In the work I am doing ,I am calculating the concentration index(ci) ,which is in between -1 and +1.So my deviance is given by abs(ci)*(1-abs(ci)).Now when I run rpart incorporating this user defined function i get the following error message: Error in

Hi all, I am experimenting to run a pass inherited from CallGraphSCCPass. In the pass, I iterate all functions in a SCC. In each iteration, I access all arguments of a function in the following way: Function::arg_iterator PI = fun->arg_begin(), PE = fun->arg_end(); ... I have no trouble with building. However, I am troubled with "segmentation fault" when I run the pass

Hi All, I have two files. 1. with only one column 2. data matrix I need to compare first columns of both files and print the rows from second file for the overlapping entries. I have solutions for awk and sed, but I need how to do it in R. Thanks Regards Anchal -- Anchal Sharma, PhD Postdoctoral Fellow 195, Little Albany street, Cancer Institute of New Jersey Rutgers University NJ-08901

Hi All, I am running a generalized linear model with gamma distribution in R (glm, family=gamma ) for my data (gene expression as response variable and few predictors). I want to calculate r-squared for this model. I have been reading online about it and found there are multiple formulas for calculating R2 (psuedo) for glm (in R) with gaussian (r2 from linear model), logistic regression

Hi all, I am experimenting to run a pass inherited from CallGraphSCCPass. In the pass, I iterate all functions in a SCC. In each iteration, I access all arguments of a function in the following way: Function::arg_iterator PI = fun->arg_begin(), PE = fun->arg_end(); ... I have no trouble with building. However, I am troubled with "segmentation fault" when I run the pass

Hi, I'm trying to load .csv file into R (3790 by 30). I'm having an odd difficulty. After I type: read.csv("niwage.csv", header = TRUE) the data appears on the screen. The last thirty or so observations appear on the screen and they have been read in correctly. However, when I type: dim(data) I see: NULL This seems odd to me--R seems to be recognizing the data but not

Hi everyone, I am wondering what is the right way to register an alias analysis pass. My alias analysis pass is implemented in a dynamic load module. As I can see, a general way to register a pass looks like: llvm::RegisterPass<Analyzer> X("rci", "RCI Pass"); However, registering a type-based analysis uses: INITIALIZE_AG_PASS(...) I think, registering an