similar to: Multiv / hierclust / plclust

my major is bioinformatics, and i'm trying to cluster ( agglomerate the closest pari of observations ) in R. i have already got my own similarities metric, but do not know how to clust it based on similarities instead of dissimilarities. since the help document of hierclust mentions the parameter "sim", which seems good to me, but it doesn't appear in the code of hierclust()

my major is bioinformatics, and i'm trying to cluster ( agglomerate the closest pari of observations ) in R. i have already got my own similarities metric, but do not know how to clust it based on similarities instead of dissimilarities. since the help document of hierclust mentions the parameter "sim", which seems good to me, but it doesn't appear in the code of hierclust()

Hallo Friedrich, I have read your announcement, downloaded and installed it in R-0.61.3. But now I have problems :) > hc <- hierclust(dist(t(pollen)), method=3) Error in pmatch(x, table) : argument is not of mode character > hc <- hclust(dist(t(pollen))) > members(hc) Error in .Fortran("assgn", n = as.integer(n), nplus1 = as.integer(nplus1), : C/Fortran function not in

After searching in R- Introduction, FAQ, help... I don't understand this: I write a function in a file (.R): tt <- function(mc) { date() mc<-read.csv2("machines.txt",na.strings="") date() } I source it in R and I type tt(). The answer is > tt() [1] "Mon Aug 14 11:18:25 2000" > The instructions following the first "date()" are ignored. Why?

Dear R-help list members i would like to use R to produce clustering or partitioning of a dataset. I am trying to use the functions: - hierclust() of the package multiv -pam(), agnes() and fanny() of the package cluster But I cannot get any result because of lack of memory. Would you know any clustering function not to greedy in memory? I have tried to expand my memory limit with memory.limit()

I've ported F. Murtagh's statlib package "multiv" to R, it can be found in the usual place on CRAN. Contents: bea Bond Energy Algorithm ca Correspondence Analysis supplc Supplementary Columns in Correspondence Analysis supplr Supplementary Rows in Correspondence Analysis flou

I've ported F. Murtagh's statlib package "multiv" to R, it can be found in the usual place on CRAN. Contents: bea Bond Energy Algorithm ca Correspondence Analysis supplc Supplementary Columns in Correspondence Analysis supplr Supplementary Rows in Correspondence Analysis flou

Hello everyone, Does anyone know how to implement the argument "unit" in R's plclust function ? I used to use Splus where this argument exists but it has not been implemented in R's plclust. The reason why I switched from Splus to R is that Ward's method is not implemented for S's hclust whereas it is implemented for R's hclust. What I would need is S's plclust

I want to plot the cluster trees from the results of hclust() on different datasets, but all with the same distance scale corresponding to the dataset with the largest distance range. However, plclust() does not accept ylim values. Does anyone know of a way around this problem? Mike White

Hi all, I need to plot a dendrogram, but I built a hclust object. Follow the code lines: >dendObject<-list(merge=merge,height=height,order=order,labels=labels,call="hclust(d=d)",method="complete", dist.method="euclidean") >class(dendObject)<-"hclust" >plclust(dendObject,axes=FALSE) Error in cl[[2]] : subscript out of bounds Anybody can help

Dear R users; I am trying to write a small program which reads in a data set, and selects observations from certain years before the analysis. I have a problem including the selection criteria in the header of the program. Here is the problem; dataFIT<-function(MODEL, MARGINS, yearConsidered){ library(foreign CovPaper<-read.spss("C:/Data/data.sav") NewData <-

I have discovered the listings package for including code in your latex documents. The default languages do not include R or Splus, but the definition is pretty simple, this is what I did for R: \lst at definelanguage{R}% {morekeywords={TRUE,FALSE,T,F,NA,NULL,Inf,NaN,library,% attach,detach,source,while,for,in,% repeat,switch,break,next,return,stop,function,% if,else,warning,error},%

Thanks to some comments from Brian D. Ripley, I found my error: I should not have given a data argument to lm() after creating a formula-object. This obviously confused things... Thanks again, I've really learnt again a bit more on R-programming... Cheers, Winfried --------------------------------------------------------------------- E-Mail: Winfried Theis <theis at

I used in previous versions of R (R 1.1) to plot axes on projections of factorial coordinates using the function plaxes. This doesn't exist any more. Why this change ? No alternative ? --------------- Charles RAUX, Laboratoire d'Economie des Transports CNRS-Universit? Lumi?re Lyon 2-ENTPE email : charles.raux at let.ish-lyon.cnrs.fr http://www.ish-lyon.cnrs.fr/let

Hi all, could anybody tell me whether there exist any packages about statistical quality control. Thanks very much. Stefano Tonellato -- Stefano Tonellato Dipartimento di Statistica Universita' Ca' Foscari di Venezia Campiello S. Agostin, S. Polo 2347 30125 Venezia - ITALY Phone +39-041-2577422 Fax +39-041-710355 E-mail stone at unive.it -------------- next part -------------- An

---------------------- Forwarded by Pan Yuming/Extern/AAM on 18.10.2000 12:58 --------------------------- Pan Yuming 18.10.2000 11:41 To: Prof Brian Ripley <ripley at stats.ox.ac.uk> cc: Subject: Help oo sink (Document link: Pan Yuming) Dear professor, continue with the example i used, i want to save the prediction results but when i run a R file containing the following code, it

Hi all, I wonder if there is a R mode for emacs which highlights the R syntax. If there is one, I would be interested in downloading the latest version . regards, Olivier -- -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- Olivier MARTIN phone: (33) 04 76 61 53 55 Projet IS2 06 08 67 93 42 INRIA Rhone-Alpes fax : (33) 04 76

Please, will someone tell me why graphics are not displayed at all when I use a graphical function. Is there some additional software required to see the graphics? ThankYou CJoseBento Portugal -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

Hi I'm using the "image" function to produce a plot and I want to define the breaks using "cut" and the colors using "heat.colors". > image(interp(mat2[,2],mat2[,1],mat2[,3]),breaks=cut(mat2[,3],30),col=heat.colors(29)) Error in image.default(interp(mat2[, 2], mat2[, 1], mat2[, 3]), breaks = cut(mat2[, : must have one more break than colour The

One more question... I need to use the Loess() function in the package modreg. What is the argument "formula" meant to be? A -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the