similar to: R-beta: R 0.50 alpha

Hi, I'm using the rsept for WINDOWS 95 (with modified men?, and "fixed" survival4). See the Ennapadam Venkatraman's example made in date 35/07/97 19.02 Ennapadam Venkatraman wrote: > library(splines) > library(survival4) > xx <- NULL > xx$ftim <- exp(-runif(100)) > xx$ctim <- 2*runif(100) > xx$sts <- 1*(xx$ftim <= xx$ctim) > xx$otim <-

I installed the latest version of R (Version 0.50 Alpha-4) and it breaks survival4 as follows (it worked fine under Version 0.50 Alpha-3) R> library(survival4) Autoloading required library: splines R> survfit(Surv(runif(25),rbinom(25,1,0.4)) ~ 1) Error in eval(frame, data)[subset, , drop = FALSE] : incorrect number of dimensions Thanks E. S. Venkatraman

I have a function that generates data and tries to apply the survfit within it. I have tried: function(..){ x ..... survfit(Surv(tim,sts) ~ grp, data = x, envir = sys.frame(sys.parent())) } but I still get "Error: Object "x" not found". Is there a fix? (I use R-0.63.2 with the current survival4 package) Thanks E. S. Venkatraman

Hi there, Here is a record of an R session: > library(survival4) Autoloading required package: splines > coxph(Surv(c(1,2,3,4), c(1,1,1,1)) ~ c(1,0,1,0)) Error in .C("coxfit2", iter = as.integer(iter.max), as.integer(n), as.integer(nvar), : C/Fortran function not in load table Why is "coxfit2" not in the load table? How do I fix it? System is Linux. Goran

I am using the 0.50 alpha version of R packaged (in 3 parts) by Kurt for Debian Linux. Package: r-base Status: install ok installed Priority: optional Section: local Maintainer: Kurt Hornik <Kurt.Hornik at ci.tuwien.ac.at> Version: 0.50b7-1 Depends: libc5, xlib6, libreadline2 Description: R, a language not entirely unlike the language S. Package: r-contrib Status: install ok

I have built R-0.50-a4 on HP9000/C160-hpux10.2 with gcc (cc for libs). When I try library(survival4) Error in pos.to.env(pos) : invalid "pos" argument And it does not load. Other libs seem to work. I tested integrate (has f2c translated c), polynomial. Is this a problem with my system only??? TIA osman =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

Hmm... I have the same problem on hpux10.20. I put the additional libs into a subdir called contrib, and R INSTALL from there. I have R-0.61.1 Alpha Dec21 1997. Without restored data they work OK. Osman > ---------- > From: Goran Brostrom[SMTP:gb at stat.umu.se] > Sent: Tuesday, January 27, 1998 3:07 AM > To: r-help at stat.math.ethz.ch > Subject: R-beta: survival4 > >

Windows 9*/NT version, on an NT box R 0.63.0 Beta (Nov 13, 1998) > library(survival4) > test <- function(x,d) { survfit(Surv(x,d) ~1) } > test( rexp(50), sample(c(0,1), size=50, replace=T) ) Error: Object "x" not found > Other functions like in the ctest library works out OK, the x and d got passed to the inner function. And here it did not got passed to

I downloaded binary of survival5 for windows95 (also the splines, date). The function survsum shows up in content, has a help page, but the function itself is missing. Can we cut and paste the survsum from survival4 ? Mai Zhou P.S. I am not picking on R, not even complaining. I think R is great and I am try to contribute my (small) part to make it even better in way of bug report (or

On a PMac 7200 (running LinuxPPC 3Q 99), trying to install "R-ctest-0.9.R16-1.ppc.rpm" and "R-splines-2.0.R3-3.ppc.rpm" rpms currently in the linuxppc binary download directory results in error messages saying that files in these rpms conflict with files from R-base 1.01-1. Of course, "R-rpart" and "R-survival4" then also can't be installed because the

I just installed the new R 0.65.1 The fonctionnality to upgrade and install packages is a very great idea. But the file PACKAGES at http://www.ci.tuwien.ac.at:80/R/src/contrib/ is outdated : 3 of the 4 packages i try to install failed with a 404 not found : the package version are newer than the entry in the PACKAGES file : survival4 survival4_1.4-0.tar.gz Version: 1.1-0 rpart rpart_1.0-7.tar.gz

I've put all ``current'' add-on packages into CRAN's source/contrib tree and created an INDEX file (attached below). As you can see, currently we have acepack bootstrap ctest date e1071 fracdiff gee jpn snns splines survival4 (Yes, e1071 and jpn are new ... more on the latter in a later mail.) In the near future, I am hoping for the following: oz (Bill

Hi I always have following error message when I try to read a big ascii-file: > inzp<-read.data() > Error: heap memory (1953 Kb) exhausted [needed 0 Kb more] read.data() is a small function that reads the ascii-file. When I cut the ascii-file to a small one I don't have this problem. Can I extend this 'heap memory' for reading big data files? How? I'm working with R on a

[This is a "spill-over" from the "R-core" mailing list, since several of you may be interested and have comments ... -MM] >>>>> "Thomas" == Thomas Lumley <thomas@biostat.washington.edu> writes: Thomas> On 29 Oct 1997, Peter Dalgaard BSA wrote: >> Perhaps we should revise the current contents of the base library >>

Hi, the ratetables package on CRAN contains no author/maintainer information whatsoever and I cannot remember who submitted it ... is the creator out there on this list? The DESCRIPTION file is missing (otherwise I wouldn't have problems with finding the author) ... Fritz -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read

Has ":=" been eliminated? It seems to be gone from the most current snapshot, which makes loading survival4 fail (it contains 6 `:=' assignments in header.R). -k =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

Can anybody explain what is happening? I am using RedHat Linux 5.0 with the latest Martyn Plummer RPM's installed, both at home and at the office. At home "survival4" is (still) working OK. At the office all the components ('survfit', 'survdiff', 'coxph, etc..) stop with an error message that they can't 'find' or 'load' the C binaries:

I reported bugs in "rhyper" and the TASKS.OLD file claims that they have been fixed. But R continues to get stuck (the prompt never comes back) if I use rhyper with N1, N2, n large, for example "rhyper(5,200,250,60)". E. S. Venkatraman (venkat at biosta.mskcc.org) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read

Is this a feature/bug or am I missing something: R : Copyright 1999, The R Development Core Team Version 0.63.2 (January 12, 1999) ...... > ls() character(0) > x <- NULL > x$x1 <- rnorm(10) > x$x2 <- rnorm(10) > mode(x) [1] "pairlist" > as.data.frame(x) Error: can't coerce pairlist into a

A cut and paste typo has crept in and is rendering all values returned for the hypergeometric distribution incorrect. The problem is in src/main/arithmetic.c in the function "math4". The lines PROTECT(sy = allocVector(REALSXP, n)); a = REAL(sa); b = REAL(sb); c = REAL(sc); d = REAL(sc); /* <-- change this line */ y = REAL(sy); should