similar to: kernlab 0.9-0 on CRAN

Hi everybody, I''m using R on a 64-bit Ubuntu 9.04 (Jaunty). I prefer to install R packages from source, even if they are available in Synaptic. The problem is that I can''t install/compile kernlab. Everything works fine until it gets to the lazy loading part: ** preparing package for lazy loading Creating a new generic function for "terms" in "kernlab"

Hi there, I'm trying to do a regression experiment on a multidimensional dataset where both x and y in the model are multidimensional vectors. I'm using R version 2.9.2, updated packages, on a Linux box. I've tried gausspr(), ksvm() and rvm(), and the models are computed fine, but I'm always getting the same error message when I try to use predict(): "Error in

Hi, I am trying to pass initial cluster assignments to the kkmeans method<http://rss.acs.unt.edu/Rdoc/library/kernlab/html/kkmeans.html>of kernlab. It is not clear to me how I can set the parameter *centers* with "initial cluster centers" as stated in the documentation? thanks, --ahmed [[alternative HTML version deleted]]

Hi! The kernlab function kpca() mentions that new observations can be transformed by using predict. Theres also an example in the documentation, but as you can see i am getting an error there (As i do with my own data). I'm not sure whats wrong at the moment. I haven't any predict functions written by myself in the workspace either. I've tested it with using the matrix version and the

hello, I have the following problem setting parameter 'frac' in the sigest function of the kernlab package. ## executing the ?sigest example: library(kernlab) data(spam) srange <- sigest(type~.,data = spam) ## works fine... ## setting 'frac' explicitly ## (in this case even to the default of .25) options(error=recover) srange <- sigest(type~.,data = spam, frac = .25) ##

Hi! how do i get to the source code of kpca or even better predict.kpca(which it tells me doesn't exist but should) ? (And if anyone has too much time: Now if i got that right, the @pcv attribute consists of the principal components, and for kpca, these are defined as projections of some random point x, which was transformed into the other feature space -> f(x), projected onto the actual

Hello list, I am faced with a two-class classification problem with highly asymetric class sizes (class one: 99%, class two: 1%). I'd like to obtain a class probability model, also introducing available information on the class prior. Calling kernlab/ksvm with the line > ksvm_model1<-ksvm(as.matrix(slides), as.factor(Class), class.weights= c("0" =99, "1" =1),

kernlab version 0.9-7 is now online and incorporates : + a much improved fast implementation of string kernels "stringdot" based on suffix arrays. + a new kernel method kmmd() which implements a non-parametric kernel based two sample test. The new kernlab version also includes many minor improvements and fixes. Alexandros _______________________________________________

kernlab version 0.9-7 is now online and incorporates : + a much improved fast implementation of string kernels "stringdot" based on suffix arrays. + a new kernel method kmmd() which implements a non-parametric kernel based two sample test. The new kernlab version also includes many minor improvements and fixes. Alexandros _______________________________________________

Dear R users, I have recently encountered a problem with using the function `library` in order to load the package `kernlab`. My output of sessionInfo() is as follows: R version 2.10.1 (2009-12-14) x86_64-unknown-linux-gnu locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base I have installed the package by

Hi, this is a question about the R package kernlab. I use kernlab as a library in a C++ program. The host application defines a graph kernel (defined by me), generates a gram matrix and trains kernlab directly on this gram matrix, like this: regm<-ksvm(K,y,kernel="matrix"), where K is the n x n gram kernelMatrix of my kernel, and y is the R-vector of quantitative target values.

Hi, I tried to load the package "kernlab" under R-v11 and R-v10, however it gave error message: Error in library.dynam(lib, package, package.lib) : shared library 'kernlab' not found In addition: Warning message: package 'kernlab' was built under R version 2.12.0 Error: package/namespace load failed for 'kernlab' Has anybody loaded this successfully before?

Hi everyone, I am trying to install kernlab package, but failed many times by now on CentOS 6 operating system. FYI, I have no problem with this package installation on windows platform. Here is the error message: trying URL 'http://cran.wustl.edu/src/contrib/kernlab_0.9-18.tar.gz' Content type 'application/x-gzip' length 1069148 bytes (1.0 Mb) opened URL

hi, I am using R's "kernlab" package, exactly i am doing classification using ksvm(.) and predict.ksvm(.).I want use of custom kernel. I am getting some error. # Following R code works (with promotergene dataset): library("kernlab") s <- function(x, y) { sum((x*y)^1.25) } class(s) <- "kernel" data("promotergene") gene <- ksvm(Class ~ .,

Hi, A. In a nutshell: The training error, obtained as "error (ret)", from the return value of a ksvm () call for a eps-svr model is (likely) being computed wrongly. "nu-svr" and "eps-bsvr" suffer from this as well. I am attaching three files: (1) ksvm.R from the the kernlab package, un-edited, (2) ksvm_eps-svr.txt: (for easier reading) containing only eps-svr

I use the svm package kernlab .I have two question. In R library(kernlab) m=ksvm(xtrain,ytrain,type="C-svc",kernel=custom function, C=10) alpha(m) alphaindex(m) I can get alpha value and alpha index about package. 1. Assumption that number of sample are 20. number of support vectors are 15. then rest 5`s alphas are 0? 2. I want use kernelMatrix xtrain=as.matrix(xtrain)

Hello, together I'm trying to use user defined kernel. I know that kernlab offer user defined kernel(custom kernel functions) in R. I used data spam including package kernlab. (number of variables=58 number of examples =4061) i'm user defined kernel's form, kp=function(d,e){ as=v*d bs=v*e cs=as-bs cs=as.matrix(cs) exp(-(norm(cs,"F")^2)/2) }

*Hello All,* I tried figuring out the problem, I was trying to use laplacedot to predict the long term, which however would not do a good job. Then, I tried to do a point by point prediction and building the model again, everytime. It shows me better results. I tried writing my kernel function (matern covariance function), and attached is the result of that. Red lines show the fit and blue lines

I have never been able to get class probabilities to work and I am relatively new to using these tools, and I am looking for some insight as to what may be wrong. I am using caret with kernlab/ksvm. I will simplify my problem to a basic data set which produces the same problem. I have read the caret vignettes as well as documentation for ?train. I appreciate any direction you can give. I

Dear all, I was wondering if someone can help me. I am learning SVM for classification in my research with kernlab package. I want to know about classification performance using Area Under Curve (AUC). I know ROCR package can do this job but I found all example in ROCR package have include prediction, for example, ROCR.hiv {ROCR}. My problem is how to produce prediction in SVM and to find