similar to: New CRAN package: DICOM

Hello, I have the following problem. After a PACS upgrade in our hospital, the dynamic 3D images acquired after contrast media injection with a 3T Philips MRI are all saved in a single 4D file instead of a series of 2D images containing multiple 3D images over time. I used to convert this series of 2D dicom images in the format nfti with oro.dicom. However, I am no longer able to make oro.dicom

dcemri 0.10 has been released on CRAN "dcemri" is (to the best of my knowledge) the first public-domain software package for the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) and diffusion-weighted MRI (DW-MRI or DWI). Data import and export is availble for ANALYZE or NIfTI data formats (sorry, no DICOM). Images are stored in neurological format regardless of the

dcemri 0.10 has been released on CRAN "dcemri" is (to the best of my knowledge) the first public-domain software package for the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) and diffusion-weighted MRI (DW-MRI or DWI). Data import and export is availble for ANALYZE or NIfTI data formats (sorry, no DICOM). Images are stored in neurological format regardless of the

Hello there! I hope there is someone out there who is using the DICOM package. When Im trying to read my a DICOM file (MRI-data) I always get this error: > dicom.info("~/myfile") Error in readBin(fid, integer(), length, size = 1) : invalid value of 'n' The DICOM files that come with the DICOM package work just fine. I already tried both endian options. I can view my

waveslim 1.4 has recently been uploaded to CRAN and is fully compatible with Rv2.0. Besides ensuring usability with the most recent version of R, two additional "flavors" of wavelet methodology have been added to the package: (1) Hilbert wavelet pairs and (2) the dual-tree complex wavelet transform [only 1D and 2D ported from Matlab code by Selesnick]. The dual-tree CWT code has

waveslim 1.4 has recently been uploaded to CRAN and is fully compatible with Rv2.0. Besides ensuring usability with the most recent version of R, two additional "flavors" of wavelet methodology have been added to the package: (1) Hilbert wavelet pairs and (2) the dual-tree complex wavelet transform [only 1D and 2D ported from Matlab code by Selesnick]. The dual-tree CWT code has

Dear R users, Has anyone implemented a "matrix log" function in R similar to the function logm() in Matlab? I did a quick R site search and browsed the contributed packages to no avail. The octave function is far too simplistic and fails for the Matlab test matrix. Ideally, the code of Cheng, Higham, and Laub (2001) or something similar could be utilized. Just checking before I

Dear R users, I am looking for code to perform a permutation version of the multivariate two-sample test (difference in means). I am aware of F. Pesarin's book and website, but his single S-Plus function does not work in R (for various reasons). Has anyone adapted (or added to) PermutationTestMeans() so that it does work in R? Or do you know of an alternative implementation that does

Dear R-help, I just configured and installed R-1.8.1 according to the following R is now configured for sparc-sun-solaris2.9 Source directory: . Installation directory: /usr/local C compiler: gcc -g -O2 C++ compiler: g++ -g -O2 Fortran compiler: g77 -g -O2 Interfaces supported: X11 External libraries: readline Additional capabilities: bzip2,

The first release of oro.dicom (v0.2.4) is now available for download from CRAN. This is a major revision and improvement that replaces the previous DICOM package. New features include: * Increased speed * Uploading only header information (for restricted memory situations) * Reading implicit value representations (VR's) * Parsing SequenceItem tags (undefined lengths are allowed) *

The first release of oro.dicom (v0.2.4) is now available for download from CRAN. This is a major revision and improvement that replaces the previous DICOM package. New features include: * Increased speed * Uploading only header information (for restricted memory situations) * Reading implicit value representations (VR's) * Parsing SequenceItem tags (undefined lengths are allowed) *

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

TOP Institute Pharma (TI Pharma) has granted our proposal to set up a mechanism-based PKPD modelling platform. This platform focuses on the transfer of knowledge from academia to the pharmaceutical industry and is a collaborative effort of four excellent academic institutes and six leading global pharmaceutical industries. Unique to this platform is the availability of shared databases on

Hi., I integrate dicom in my rails application that purpose i install RMagick gem then the following errors are came. C:\Ruby187\bin>gem install RMagick Temporarily enhancing PATH to include DevKit... Building native extensions. This could take a while... ERROR: Error installing RMagick: ERROR: Failed to build gem native extension. C:/Ruby187/bin/ruby.exe extconf.rb checking

Everyone, Have any of you had any luck getting aeskulap to work with Centos7. We have just migrated some desktops from Fedora 20 to Centos. but aeskulap is not in the centos 7 repos. aeskulap was a decent dicom viewer and was able to connect to our pacs server. If there are other viewers that any of you have used I would be interested in the dialog of what you have used and any difficulties

Apology for the cross-post... Andy ============================================== Job description: Computational statistician/medical image analyst The Biometrics Research Department at Merck Research Laboratories, Merck & Co., Inc. in Rahway, NJ is seeking a highly motivated statistician/data analyst to work in its basic research and drug discovery area. The applicant should have broad

Hi, there: As you all know, correlation is not a very robust procedure. Sometimes correlation could be driven by a few outliers. There are a few ways to improve the robustness of correlation (pearson correlation), either by outlier removal procedure, or resampling technique. I am wondering if there is any R package or R code that have incorporated outlier removal or resampling procedure in

Dear R-help, I just configured and installed R-1.8.1 according to the following R is now configured for sparc-sun-solaris2.9 Source directory: . Installation directory: /usr/local C compiler: gcc -g -O2 C++ compiler: g++ -g -O2 Fortran compiler: g77 -g -O2 Interfaces supported: X11 External libraries: readline Additional capabilities: bzip2,

Hello, I use wavethresh packages to perform wavelet analysis. In particular, I would like to compare 2 signals (vectors) after a wavelet decomposition. I would like to use cor.test function, but this function acts on the entire vector values. I plan to perform a cor.test on each level of the wavelet decomposition, say N. So I will have at the end of a first step N results of cor.test. How can

Dear R users, I am curious to know if someone has connected R with the Insight Segmentation and Registration Toolkit (www.itk.org). From the website... ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and