Hello,
I have the following problem. After a PACS upgrade in our hospital, the dynamic
3D images acquired after contrast media injection with a 3T Philips MRI are all
saved in a single 4D file instead of a series of 2D images containing multiple
3D images over time. I used to convert this series of 2D dicom images in the
format nfti with oro.dicom. However, I am no longer able to make oro.dicom read
my single 4D dataset whereas it is perfectly opened by imageJ.
Did you also face this problem? Do you know a way to solve it?
In the following link, I put an anonymized file containing the 4D dicom image
(288 x288 x 40 x 20 ) which is 20 time frame of a 40 slices data set (288 x
288). It is pretty heavy (around 137 Mo).
http://dl.free.fr/au9fVFq42
Here is a part of the dicom header of this file.
Thank’s in advance !
JP
0002,0002 Media Storage SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.1
0002,0003 Media Storage SOP Inst UID:
1.3.46.670589.11.24148.5.20.1.1.6696.2011112916034476783
0002,0010 Transfer Syntax UID: 1.2.840.10008.1.2.1
0002,0012 Implementation Class UID: 1.2.276.0.7238010.5.0.3.5.4
0002,0013 Implementation Version Name: OSIRIX
0008,0005 Specific Character Set: ISO_IR 100
0008,0008 Image Type: ORIGINAL\PRIMARY\T1\NONE
0008,0012 Instance Creation Date: 20111129
0008,0013 Instance Creation Time: 161134
0008,0014 Instance Creator UID: 1.3.46.670589.11.24148.5
0008,0016 SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.1
0008,0018 SOP Instance UID:
1.3.46.670589.11.24148.5.20.1.1.6696.2011112916034476783
0008,0020 Study Date: 20111129
0008,0021 Series Date: 20111129
0008,0023 Image Date: 20111129
0008,002A ---: 20111129160344.75000
0008,0030 Study Time: 140059.000
0008,0031 Series Time: 160344.75000
0008,0033 Image Time: 161142
0008,0050 Accession Number: A10080336707
0008,0060 Modality: MR
0008,0070 Manufacturer: Philips Medical Systems
0008,0080 Institution Name: HUG
0008,0090 Referring Physician's Name: SRV-CHURO PC-URO
0008,0100 Code Value:
0008,0102 Coding Scheme Designator: DCM
0008,0104 Code Meaning:
0008,1010 Station Name: PETMRSC
0008,1030 Study Description: IRM prostate
0008,1032 Procedure Code Sequence:
0008,0100 Code Value: IRMPROST
0008,0102 Coding Scheme Designator: XPLORE
0008,0104 Code Meaning: IRM prostate
0008,010B ---: N
0008,103E Series Description: dyn_THRIVE NEW SENSE
0008,1040 Institutional Department Name: PET/MR
0008,1070 Operator's Name:
0008,1080 Admitting Diagnoses Description:
0008,1090 Manufacturer's Model Name: GEMINI
0008,1110 Referenced Study Sequence:
0008,1150 Referenced SOP Class UID: 1.2.840.10008.3.1.2.3.1
0008,1155 Referenced SOP Instance UID:
2.16.840.1.113669.632.20.1211.10001541770
0008,1111 Referenced Study Component Sequence:
0008,0012 Instance Creation Date: 20111129
0008,0013 Instance Creation Time: 161124
0008,0014 Instance Creator UID: 1.3.46.670589.11.24148.5
0008,1150 Referenced SOP Class UID: 1.2.840.10008.3.1.2.3.3
0008,1155 Referenced SOP Instance UID:
1.3.46.670589.11.24148.5.0.3344.2011112914005962129
0020,0013 Image Number: 0
2005,0014 ---: Philips MR Imaging DD 005
0008,1115 Referenced Series Sequence:
0008,1150 Referenced SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.1
0008,1155 Referenced SOP Instance UID:
1.3.46.670589.11.24148.5.699694036.1.1.6696.2011112914565018461
0020,000E Series Instance UID:
1.3.46.670589.11.24148.5.0.6696.2011112914565018461
0020,000D Study Instance UID: 2.16.840.1.113669.632.20.1211.10001541770
0008,1115 Referenced Series Sequence:
0008,1150 Referenced SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.1
0008,1155 Referenced SOP Instance UID:
1.3.46.670589.11.24148.5.1209764884.1.1.6696.2011112915541254683
0020,000E Series Instance UID:
1.3.46.670589.11.24148.5.0.6696.2011112915541254683
0020,000D Study Instance UID: 2.16.840.1.113669.632.20.1211.10001541770
0008,1115 Referenced Series Sequence:
0008,1150 Referenced SOP Class UID: 1.2.840.10008.5.1.4.1.1.4.1
0008,1155 Referenced SOP Instance UID:
1.3.46.670589.11.24148.5.663994132.1.1.6696.2011112914341534045
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