similar to: Quartz graphic device can be extremely slow in some cases

Hello, I asked this question a little while ago ( https://stat.ethz.ch/pipermail/r-help/2008-April/158761.html ) but got no response. Can anybody explain to me the difference between /, :, and %in% in the definition of random effects in lmer, such as: (1|A/B), (1|A:B), (1|B %in% A)? My understanding is that (1|A/B) is the same as (1|A) + (1|A:B), but I have not seen this stated explicitly

Hello list, I'm trying to figure out how exactly the specification of nested random effects works in the lmer function of lme4. To give a concrete example, consider the rat-liver dataset from the R book (rats.txt from: http://www.bio.ic.ac.uk/research/mjcraw/therbook/data/ ). Crawley suggests to analyze this data in the following way: library(lme4) attach(rats) Treatment <-

Hi Subassignment for units has been committed to r-devel. You should now be able to do things like ... x <- unit(1:3, "mm") x[2] <- unit(.5, "npc") (see grid/tests/units.R for more complex examples) This works for me for the three stackoverflow scenarios. Any confirmation that it also works for you would be welcome. Paul On 07/03/16 07:34, Wilke, Claus O wrote: >

Paul, Subassignment for units has been committed to r-devel. You should now be able to do things like ... x <- unit(1:3, "mm") x[2] <- unit(.5, "npc") (see grid/tests/units.R for more complex examples) Yes, I just tried the latest R devel and it works for me. However: This works for me for the three stackoverflow scenarios. I ran into an additional problem when

Hello, certain manipulations of ggplot2 graphs, in particular aligning them, require the function grid:::unit.list(). See e.g. these posts on stackoverflow: http://stackoverflow.com/questions/34032621/element-replacement-in-grid-unit-vector http://stackoverflow.com/questions/32580946/setting-absolute-size-of-facets-in-ggplot2/32583612#32583612 http://stackoverflow.com/a/35823179/4975218 Since

I have executed a Repeated Measures ANOVA with one DV (latency) and one within subject factor (acoustic condtion: 3 levels) by bootstrapping my sampling distribution of F from the empirical sample distribution. I chose to resample because the sample distribution deviates from normality a lot. The overall F is significant and now I wish to decompose this with contrasts to ask if latencies to

I have some code that calls R's finalizer interface, e.g., .Call('R_RegisterFinalizerEx', object, function, TRUE) This worked pre 1.6, but now I get '.Call function name not in call table'. Are functions listed in Rinternals.h no longer available in .Call? Or is this a namespace issue? How do I reference the function? Thanks. Tim -- Timothy H. Keitt The University of

(Tried this query on r-help with no luck, maybe someone here can help?) I would like to call the 'RFinalizerEx' function that appears in Rinternals.h using ".Call". It worked for me in the past, but now I get an error message something like: 'call function name not in call table'. I'm using the 1.6.1 rpm from CRAN. Anyone know what's going on? Thanks. Tim --

Hi Folks, I have repeated measures for data on association time (under 2 acoustic condtions) in male and female frogs as they grow to adulthood (6 timepoints). Thus, two within-subject variables (Acoustic Condition: 2 levels, Timepoint: 6 levels) and one between-subject variable (Sex:male or female). I am pretty sure my distributions depart from normality but I would first like to simply run a

Small things, mostly. 1. Buildproblem. Well-known and annoying. Build fails if debugging is on (which is the default) because Debugging.h breaks devQuartz.c compiles. If debugging is switched off on the command line or in the environment, then devQuartz.c builds, but aquaconsole.c does not compile, because it needs Debugging.h. I do not want to edit Apple system files, and not files in the R

I would like to Build R-2.5.1 on OpenSUSE 10.2 using the SunStudio 12 compilers(http://developers.sun.com/sunstudio/index.jsp) R builds and passes make check fine without optimising. However, when I try to compile with optimisation turned on (-fast) the build gets stuck in an infinite loop at the following point: Sun_Studio/sunstudio12/bin/cc -m64 -shared -Kpic -m64 -fPIC -o grDevices.so

Hello everybody,I am having an error while compiling R-2.5.0 on Linux powerpc. This is what I see when I do a make: gcc -std=gnu99 -shared -L/usr/local/lib -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o ../../../../library/grDevices/libs/grDevices.so is unchanged make[5]: Leaving directory `/home/vivekv/sw_alg/R-2.5.0/src/library/grDevices/src' make[4]: Leaving

Thanks Byron, I assume you use new Devel Tool updates and nothing from fink? Can other people with new dev tools check this (for example Jan?) It would be nice to update the instuction page (and R-admin in the future) some general notes: 1. there is no need to configure with --without-x as X11 can now be used from inside RAqua 2. please use R-devel and not R-Sig-Mac as we will soon close this

Hi, I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10. I am using Sun Studio 12. I get the following error: cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library

Dear all, I have some problems to install R-2.4.1 on AIX 5.3. Configure string: ./configure --with-readline=no LDFLAGS='-bshared' --with-jpeglib=no --with-libpng=no --with-lapack=no --prefix=/cineca/prod/Bioinf/R-2.4.1 configure .site= #! /bin/sh CC=xlc F77=xlf MAIN_LDFLAGS=-Wl,-brtl SHLIB_LDFLAGS=-Wl,-G CXX=xlc CXXFLAGS=' -g -O' SHLIB_LDFLAGS=-W1, -G MAKE=gmake Configure ends

> replicate(1000, {dev.new(); dev.off()}) R(83204,0xacdc1a28) malloc: *** mmap(size=16777216) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug R(83204,0xacdc1a28) malloc: *** mmap(size=16777216) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug ... *** caught bus error

Hello, I used the function cor to calculate the pearson correlation coefficient between variables. However, the resulting values do not correspond to the outcome of my excel-calculations, for which I used the formula Cor(x,y)=Cov(x,y)/(SD(x)*SD(y)) So my question is: How does the function "cor" compute the pearson correlation coefficient? Thank you in advance, Ake Nauta

Oftentimes, I see graphs on the web that *look* like they've been produced by R, but I can never be sure. Or can I? I notice that PostScript files include a "%%%Creator: R Software" line, but do R graphics drivers encode any identifying information in GIF or PNG files more commonly used on the web? And of so, would such evidence necessarily be obliterated in post-processing (e.g

Colleagues I am working in a Linux OS with R 2.6.2. I need to execute a telnet session to another Linux machine from R, perform some operations, then return to the original computer. When I am in an R session, this is easy to accomplish by typing: system("telnet -l username machinename") I am then asked for my password; once that is entered, I am connected to the remote

Many Japanese were troubled with the setting of the font. I added the following to .Rprofile first. setHook(packageEvent("grDevices", "onLoad"), function(...){ grDevices::quartzFonts(sans=grDevices::quartzFont( c("Hiragino Kaku Gothic Pro W3", "Hiragino Kaku Gothic