similar to: Dependency problem with "python-rpy2" package

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

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Hi - I am having trouble installing rpy2. I have already compiled R as a shared library, but I do not have admin privileges on so I am trying to install rpy2 with: pip install -user rpy2 but I am getting the following error: ======================================== ./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory compilation terminated. error:

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

Hi, I am trying to compile R with the command below in order to install rpy2. ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x --enable-R-shlib However, error the I have gotten was: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against `R_FunTab' can not be used when making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Hi This is my function. It serves an HTML page after the calculations. I'm connecting to a MSSQL DB using pyodbc. def CAPM(self,client): r=self.r cds="1590" bm="20559" d1 = [] v1 = [] v2 = [] print"Parsing GET Params" params=client.g[1].split("&") for items in

Hi, Have installed Ubuntu packages for R by adding: deb http:///bin/linux/ubuntu hardy/ to my /etc/apt/sources.list file and using: sudo apt-get update sudo apt-get install r-base I understand that to enable shlib I need to download source files to my home directory. When I run apt-get source r-base I get the message: You must put some 'source' URIs in your sources.list Fair enough!

After Johannes set up the CRAN repository for Jessie, I had quite some trouble figuring out what any user should do to have a running and up-to-date R in Debian (particularly Testing). Part of the problem is, I think, the overwhelming documentation on the page "DEBIAN PACKAGES OF R SOFTWARE" which is provided on CRAN at /bin/linux/debian. Some information is also lacking in places.

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

Hi Johannes, I didn't know what would be the best approach to modify the page?how it was generated, is there a central place, etc.?which is why I posted on r-sig-debian in the first place. Anyway, although I'm more or less familiar with markdown and pandoc, it was easier for me to edit directly README.html as it was on CRAN. Please find attached a revision with the modifications I

Hi again. I'm putting together a little project with R, python, and a website. So I have an HTML file, a py file, an R file. Here is the HTML file: <form action="/cgi-bin/radio4.py" method="post" target="_blank"> <input type="radio" name="subject" value="Integrate" /> Integrate <input type="radio"

Hi everyone, I'm having trouble adding error bars to a grouped barchart in lattice. I know that this topic has been addressed quite a bit, as I've been searching the internet for a while to try to troubleshoot the issue, but I've not been able to find any solution that I could get working on my data. I was wondering if someone could look at my code and tell me what I'm doing

Dear all, I having a trouble installing R on debian 6 squeeze. Apt can not find some packages on repository. It seems like that some packages missed. Can you please help me with this? Thank you in advance. Harutyun khachatryan. P.S. It writing something like this. It doesn't depends on CRAN mirror. I have tried a lot of different CRAN mirrors with the same result. Err

Thanks Johannes to clarify this point. It makes more sense to me now. So I understand that the idea is to make it simpler without apt-pinning for less adventurous people (I mean normal people :)): just add jessie-cran3 repo and you're good to go. Am I also correct that jessie-cran3 is essentially a backport of Debian SID, with some (short?) delay? In other words, modulo a couple of days,

Dear Johannes, Thanks a lot for this work! I have to admit that I'm now a little bit puzzled, though. I'm running Debian Jessie (current testing) with great satisfaction. When it comes to R, I simply have the SID repository (official Debian) enabled, with some pining to get only R-related stuff. Now, I'm not sure to understand the benefit of using the CRAN repository for Jessie?I

Hi all, I experienced for a second time the crash of asterisk process during the night. Nothing in Asterisk messages logs, nothing in /var/log/messages can explain that. Maybe someone experienced something similar and can drive me in the resolution ? Regards, A.L -------------- next part -------------- An HTML attachment was scrubbed... URL:

> otherwise I will only have time in the weekend to do something (amend the > README or set up a new repo for jessie) on the weekend. The repository for jessie is in the works - but don't expect it to be up before next weekend. Johannes

I am trying to create a pie chart using rpy2 of the following data Pathway Occurrences A 10% B 50% C 20% E 10% filename = './testing.png' grdevices = importr('grDevices') rdevices.png(file=filename, width=1200, height=800) dataf = Robjects.DataFrame({'pathways':Robjects.StrVector(Pathways),