similar to: Upgrade to CentOS6.6: mpich dep error

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Version:

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently

R-users, My question is related to earlier posts about benefits of quadcore over dualcore computers; I am trying to setup a cluster of windows xp computers so that eventually I could make use of 10-20 cpu:s, but for learning how to do this, I am playing around with two laptops. I thought that the package snow would come handy in this situation, but to use snow, I would probably need to install

*Hi everyone, I am a new subscriber, so I hope I'm posting in the right way. I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5 R package; in downloaded a small sample file from the hdf5 website and I could correctly load it. But when I try to load my file: * require(hdf5) rm(list=ls()) ls() hdf5load("my_file.h5", verbosity=3) *I get this error message: *

Dear all, I have a large dataset of randomly generated weighed sample for which I wish to compute a kernel density estimate. I have used the "np" package successfully for smaller datasets, however for the larger ones, they take too long when using the cross validation options for bandwidth selection ("cv.ls" or "cv.ml"). Of course, they are much quicker with

Hi, I've launched a "yum upgrade" command on a CentOS6 laptop which has updated nearly 600 packages. Automatic updates were not working because of a conflict on a package. So the laptop is now uptodate but the camera did not works after this. The message is: kernel: uvcvideo: Failed to query (GET_DEF) UVC control 6 on unit 2: -110 (exp. 2). The camera is detected as USB,

Hi, everyone, I want to install Rmpi on a cluster with Fedora linux. It already installed mpich2, but not lam-mpi. I installed R-2.2.0 on it already. And I got error as below: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are

I''m running puppetd as root and I''m trying to execute tar as the "puppetd" user 59 define untar ( $source, $dest, $creates, $user = "puppetd" ) { 60 exec { "tar -xzf $source" : 61 cwd => $dest, 62 path => "/bin:/usr/bin", 63 user => $user, 64 creates => $creates,

CentOS Errata and Bugfix Advisory 2013:1187 Upstream details at : https://rhn.redhat.com/errata/RHBA-2013-1187.html The following updated files have been uploaded and are currently syncing to the mirrors: ( sha256sum Filename ) i386: 4d9890eb6188a0e2b4cb664cec93cae75a4df4e2ef1f6360b4f9405e495f0175 boost-1.41.0-18.el6.i686.rpm 9856b6443740b8cbb217adeb51d90da211a5d395284712ec9e04554e2366eff7

Send CentOS-announce mailing list submissions to centos-announce at centos.org To subscribe or unsubscribe via the World Wide Web, visit http://lists.centos.org/mailman/listinfo/centos-announce or, via email, send a message with subject or body 'help' to centos-announce-request at centos.org You can reach the person managing the list at centos-announce-owner at centos.org When

CentOS Errata and BugFix Advisory 2015:C001 Upstream details at : http://bugs.centos.org/view.php?id=8117 The following updated files have been uploaded and are currently syncing to the mirrors: ( sha256sum Filename ) i386: 6044ee7a7863e087a32391c31d94e030abf7d6d5d74dff8a6bd96cd32c5c63ca boost-1.41.0-25.el6.centos.i686.rpm bff46f66bdf08d7af49f2579070a2986489f4d0cf2fc50fbefb1db1bbf8b4b44

Send CentOS-announce mailing list submissions to centos-announce at centos.org To subscribe or unsubscribe via the World Wide Web, visit http://lists.centos.org/mailman/listinfo/centos-announce or, via email, send a message with subject or body 'help' to centos-announce-request at centos.org You can reach the person managing the list at centos-announce-owner at centos.org When

Send CentOS-announce mailing list submissions to centos-announce at centos.org To subscribe or unsubscribe via the World Wide Web, visit http://lists.centos.org/mailman/listinfo/centos-announce or, via email, send a message with subject or body 'help' to centos-announce-request at centos.org You can reach the person managing the list at centos-announce-owner at centos.org When

Send CentOS-announce mailing list submissions to centos-announce at centos.org To subscribe or unsubscribe via the World Wide Web, visit http://lists.centos.org/mailman/listinfo/centos-announce or, via email, send a message with subject or body 'help' to centos-announce-request at centos.org You can reach the person managing the list at centos-announce-owner at centos.org When

Hi List, I'm trying to install aroma.affymetrix, which depend on many packages, affyio is one of them. The task is done on 32-bit Linux without problem. The same task was done on Solaris 9 with R-2.5.1 without problem. Following is the error message when installation affyio. I did try to put a file stdint.h I got from the web in the path, but got more error messages. Jun root@biostatsun1

V; Sent via BlackBerry from T-Mobile -----Original Message----- From: r-help-request at r-project.org Date: Tue, 30 Sep 2008 12:00:06 To: <r-help at r-project.org> Subject: R-help Digest, Vol 67, Issue 31 Send R-help mailing list submissions to r-help at r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/r-help or, via email,