similar to: configure / linking problem when using hdf5

Dear all I'm trying to install the hdf5 library into R. The HDF5 package is installed in a special directory, distributed accross my cluster: /share/apps/HDF5 So i put the args option to the configure command as i read in previous post in the list: jerome]# R CMD INSTALL --configure-vars='LDFLAGS=-L/share/apps/HDF5/lib' --configure-args='--with-hdf5=/share/apps/HDF5'

I am writing an R package to interface to hdf5 files (yes I know one exists, the issue will be demonstrated using that package). I tend to like to build/install things locally so that aspects of the system I am working on don't cause problems later when attempting to install elsewhere. To this end, I build and install the hdf5 libraries w/out incident: tar xzf hdf5-1.8.4.tar.bz2 cd hdf5-1.8.4

###### ## ## ###### ## ### ## ## ###### ## # ## ## ## ## ### ## ###### . ## ## . ######. Secure Networks Inc. Security Advisory February 24, 1997

Hi all, I try to use the hdf5 package. I downloaded the Windows binary version, and it claims it requires hdf5dll.dll library, so I download the whole hdf5 1.4.3 package from NCSA. Unfortunatelly, it crashes R. I suspect it is because the package was probably compiled against version 1.2 of hdf5 (as evoked in the help file?) or any other previous version, so I downloaded the source of the package

Full_Name: Christine Brower Version: 1.4.1 OS: Solaris 8 Submission from: (NULL) (128.151.148.205) Configure options fails with following message: ./configure --with-f77 loading cache ./config.cache checking for a BSD compatible install... tools/install-sh -c checking whether build environment is sane... yes checking whether make sets ${MAKE}... yes checking for working aclocal... missing

--=-=-= Included below are: 1) Diffs to to remove HDF5 from R 2) Diffs to pass thru --with-* options to a module's configure script during "R INSTALL". (To reiterate a plea for this capability...) This applies only to Unix, the Windows (mingw32 in my case) build approach of passing in make variables like *-CFLAGS and *-LDFLAGS works fine. The only hitch

Hello, I downloaded tinc 1.0.9 from the site and tried to build on Fedora 10 on i386 (and also x86_64). I get, during the configure phase: checking for zlib.h... yes checking for compress2 in -lz... yes checking for lzo1x_1_compress in -llzo2... no checking for lzo1x_1_compress in -llzo... no configure: error: "lzo libraries not found." but: # rpm -qi lzo Name : lzo

Only three entries thus far. Please keep them coming in. -k NAME Martyn Plummer EMAIL plummer@iarc.fr VERSION 0.63.3 PLATFORM i386-unknown-linux SYSTEM Redhat 5.1 CC/FC/MAKE gcc/egcs-g77/make NAME Douglas Bates EMAIL bates@stat.wisc.edu VERSION 0.63.3 PLATFORM i386-unknown-linux SYSTEM Debian 2.1 CC/FC/MAKE egcs/g77/make NAME Thomas

NAME Douglas Bates EMAIL bates@stat.wisc.edu VERSION 0.63.3 PLATFORM i386-unknown-linux SYSTEM Debian 2.1 CC/FC/MAKE egcs/g77/make NAME Martyn Plummer EMAIL plummer@iarc.fr VERSION 0.63.3 PLATFORM i386-unknown-linux SYSTEM Redhat 5.1 CC/FC/MAKE gcc/egcs-g77/make NAME Göran Broström EMAIL gb@stat.umu.se VERSION 0.63.3 PLATFORM

The basic question is: How can I pass configure script command line flags from the R CMD command? Now I try to install the HDF5 package on Linux (SuSE 7.3). I got hdf5 libraries installed in /usr/local/hdf5 (man/lib/bin). I understood to install packages the following way: as root# R CMD INSTALL hdf5_1.4.7.tar.gz Installing source package `hdf5' ... checking for gcc... gcc checking for

I tried a compilation of R-0.62.1 on a DEC Alpha that identifies itself as Digital UNIX V4.0A (Rev. 464); Thu May 14 14:08:00 CDT 1998 $ uname -a OSF1 atlas.stat.wisc.edu V4.0 464 alpha I got to the final link step then got an error with gcc -ieee_with_inexact -g -O2 -I../include -c version.c f77 -o R.binary arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o

Full_Name: Nick Guoth Version: 1.2.3 OS: SunOS 5.8 Generic_108528-03 Submission from: (NULL) (150.203.33.227) >From running the make, the following error occurs: gcc -I. -I../../../src/include -I../../../src/include -I/opt/x11r6.3/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rbitmap.c -o rbitmap.o rbitmap.c: In function `R_SaveAsPng': rbitmap.c:169:

Hi folks! I'm trying to get rid of any dependency on libgcc*, but without success so far. The following commands were executed on a freshliy installed and updated Ubuntu 16.04 LTS: === snip === sudo apt-get install build-essential libffi-dev cmake # see aptget.txt for packages installed sudo mv /usr/local /usr/local.orig git clone https://github.com/llvm/llvm-project.git cd llvm-project; git

Hi there, I have a Java process that writes HDF5 files with the following approximate structure: group "xxx" { group "yyy" { dataset {} dataset {} } group "zzz" { dataset {} dataset {} } } where dataset is a rank one dataspace having a compound datatype defined as: H5T_UNIX_TIME, float, float, float, float I

I am trying to build hdf5 for ms-windows. I downloaded the hdf5_1.4.7.tar.gz, gunzipped it and got a tar file. I extracted everything into a directory tree called hdf5. I also found a Makevars.win and libhdf5.def in the R help archives from March 2002. I put those two in hdf5 as well. I issued the command Rcmd build --binary hdf5 but got this message complaining it can''t find

Hello, I want to install hdf5 libraries for R and I get the same error as posted below whether I try install.packages("hdf5") from R command prompt or the command line installation below. I would appreciate if any one could help me on this. [alamj@thor hdf5]$ ./configure --with-hdf5=/bluejay/apps/HDF5-1.6.6/x86_64 checking for gcc... gcc checking for C compiler default output... a.out

Hello All, I just signed up to this list, so I apologize if this question has been asked before. I am trying to load an hdf5 file into R and running into some problems. Here are the steps I took to configure my environment: * R 2.10.0 (x64) on Mac OS X 10.6 * hdf5 1.8.3 installed via macports * hdf5_1.6.9.tar.gz from CRAN I suspect the problem I am having relates to

Dear R-user group I am currently running R-0.90.1-1 for LinuxPPC on my PowerBook. Few days ago I have seen at CRAN that a new R-package exists, namely R-base-with-hdf5-0.90.1-2. Sorrowly, I could not find any explanation, what the difference to the other package is. I have downloaded the "Introduction to HDF5 Release 1.2" from hdf.ncsa.uiuc.edu/HDF5. It seems that HDF5 is a data

*Hi everyone, I am a new subscriber, so I hope I'm posting in the right way. I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5 R package; in downloaded a small sample file from the hdf5 website and I could correctly load it. But when I try to load my file: * require(hdf5) rm(list=ls()) ls() hdf5load("my_file.h5", verbosity=3) *I get this error message: *

HDF5 is a high quality data storage format from NCSA (http://hdf.ncsa.uiuc.edu/index.html) Marcus Daniels of the Swarm Development Group has made available an R library called hdf5 which allows loading and saving of data in hdf5 format. The source for his library is here: ftp://ftp.swarm.org/pub/swarm/src/testing/hdf5_1.4.7.tar.gz I prefer to use RPMs to maintain software across many linux